Os05g0552500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Erv1/Alr domain containing protein.
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Os05g0552500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Erv1/Alr domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.47 | 0.237 | 12 | -0.723 | 0.039 | 0.583 | -0.71 | -0.733 | 0.0356 | 11.1 | 19.97 | 270 | -- | -- |
| 25.68 | 0.236 | 11.9 | -0.594 | 0.0461 | 0.569 | -0.749 | -- | 0.0738 | 12.1 | 18.5 | 259 | -- | -- |
| 27.52 | 0.244 | 12 | -0.776 | 0.0378 | 0.608 | -- | -0.747 | 0.0217 | 12.1 | 18.8 | 249 | -- | -- |
| 27.92 | 0.246 | 11.9 | -0.609 | 0.0855 | 0.532 | -- | -- | 0.0816 | 15.5 | 18 | 260 | -- | -- |
| 27.56 | 0.245 | 12 | -0.792 | -- | 0.617 | -- | -0.928 | 0.0196 | -- | 18.92 | 225 | -- | -- |
| 31.14 | 0.262 | 11.9 | -0.474 | 0.254 | -- | -0.536 | -- | 0.17 | 15.1 | -- | -- | -- | -- |
| 31.74 | 0.264 | 11.9 | -0.485 | 0.27 | -- | -- | -- | 0.168 | 16.2 | -- | -- | -- | -- |
| 28.26 | 0.248 | 11.9 | -0.624 | -- | 0.592 | -- | -- | 0.0682 | -- | 18 | 244 | -- | -- |
| 36.63 | 0.282 | 11.9 | -- | 0.183 | 0.264 | -- | -- | 0.182 | 15.4 | 20.4 | 338 | -- | -- |
| 35.68 | 0.279 | 11.9 | -0.496 | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
| 37.94 | 0.288 | 11.9 | -- | 0.279 | -- | -- | -- | 0.222 | 16.2 | -- | -- | -- | -- |
| 37.83 | 0.286 | 11.9 | -- | -- | 0.392 | -- | -- | 0.167 | -- | 22.24 | 250 | -- | -- |
| 42.17 | 0.303 | 11.9 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 10 | 25.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 39 | 25.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 43 | 25.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 47 | 25.47 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 67 | 25.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 74 | 25.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 79 | 25.68 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 86 | 25.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 91 | 25.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 119 | 25.78 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 130 | 25.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 133 | 25.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 142 | 25.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 154 | 25.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 194 | 25.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 211 | 25.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 223 | 25.93 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 15 |
| 293 | 26.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 414 | 26.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 419 | 26.09 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 451 | 26.11 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 573 | 26.19 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 638 | 26.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 659 | 26.25 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 808 | 26.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 829 | 26.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 899 | 26.37 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 994 | 26.42 | radiation | 10 | 720 | < th | dose independent | sin | 13 | NA |
| 1000 | 26.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 2 |