Os05g0551900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CRS1.
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Os05g0551900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CRS1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.54 | 0.612 | 11.5 | 0.918 | 6.73 | 3.56 | 0.254 | -0.457 | -0.317 | 16.8 | 31.8 | 221 | 21.1 | 6.31 |
| 169.66 | 0.607 | 11.5 | 0.905 | 6.76 | 3.57 | 0.465 | -- | -0.313 | 16.7 | 32.11 | 212 | 21.1 | 6.32 |
| 169.56 | 0.606 | 11.5 | 0.913 | 6.76 | 3.58 | -- | -0.596 | -0.316 | 16.7 | 32.04 | 215 | 21.1 | 6.37 |
| 170.39 | 0.608 | 11.5 | 0.89 | 6.74 | 3.57 | -- | -- | -0.315 | 16.8 | 31.83 | 211 | 21.2 | 6.32 |
| 1787.51 | 1.97 | 11.6 | 1.23 | -- | 1.48 | -- | -0.792 | -0.589 | -- | 67.33 | 4297 | 21.4 | 6.98 |
| 291.26 | 0.8 | 11.6 | 0.639 | 5.44 | -- | 0.581 | -- | -0.681 | 17.7 | -- | -- | -- | -- |
| 292.09 | 0.8 | 11.6 | 0.635 | 5.44 | -- | -- | -- | -0.678 | 17.7 | -- | -- | -- | -- |
| 1282.21 | 1.68 | 11.5 | 0.559 | -- | -2.61 | -- | -- | -0.669 | -- | 74.14 | 1352 | 22.9 | 8.7 |
| 191.18 | 0.644 | 11.6 | -- | 6.79 | 3.54 | -- | -- | -0.368 | 16.7 | 32.79 | 204 | 21.2 | 6.43 |
| 1830.42 | 2 | 11.5 | 0.464 | -- | -- | -- | -- | -0.808 | -- | -- | -- | -- | -- |
| 302.72 | 0.814 | 11.6 | -- | 5.43 | -- | -- | -- | -0.749 | 17.7 | -- | -- | -- | -- |
| 310.92 | 0.821 | 11.5 | -- | -- | -5.51 | -- | -- | -0.687 | -- | 69.84 | 591 | 21.3 | 7.3 |
| 1836.09 | 2 | 11.6 | -- | -- | -- | -- | -- | -0.859 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 174.97 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 5 | 186.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 7 | 187.02 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 8 | 187.03 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 9 | 187.08 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 10 | 187.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 32 | 192.76 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 13 |
| 35 | 193.43 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 46 | 195.35 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 88 | 200.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 90 | 200.39 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 110 | 202.23 | temperature | 25.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 121 | 203.15 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 128 | 203.50 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 13 |
| 130 | 203.57 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 131 | 203.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 133 | 203.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 152 | 204.62 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 157 | 204.82 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 164 | 205.18 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 172 | 205.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 173 | 205.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 175 | 205.59 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 205 | 206.30 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 207 | 206.30 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 208 | 206.30 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 210 | 206.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 211 | 206.30 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 212 | 206.30 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 214 | 206.30 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 229 | 206.81 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 242 | 207.22 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 263 | 208.24 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 276 | 208.60 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 315 | 209.74 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 340 | 210.30 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 356 | 210.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 22 |
| 359 | 210.67 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 392 | 211.41 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 395 | 211.50 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 405 | 211.66 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 18 |
| 406 | 211.66 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 428 | 212.18 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 439 | 212.30 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 457 | 212.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 2 |
| 459 | 212.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 465 | 212.74 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 483 | 212.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 489 | 213.06 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 499 | 213.11 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 502 | 213.13 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 2 |
| 514 | 213.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 516 | 213.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 517 | 213.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 520 | 213.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 521 | 213.32 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 2 |
| 525 | 213.32 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 526 | 213.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 537 | 213.44 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 6 |
| 539 | 213.44 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 545 | 213.50 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 553 | 213.60 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 580 | 213.91 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 600 | 214.13 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 602 | 214.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 603 | 214.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 605 | 214.13 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 606 | 214.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 637 | 214.45 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 7 |
| 639 | 214.46 | temperature | 20.0 | 30 | < th | dose independent | sin | 9 | NA |
| 652 | 214.61 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 655 | 214.65 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 701 | 214.99 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 710 | 215.05 | temperature | 20.0 | 10 | < th | dose independent | rect. | 22 | 8 |
| 785 | 215.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 787 | 215.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 790 | 215.90 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 829 | 216.08 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 846 | 216.22 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 850 | 216.26 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 851 | 216.26 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 876 | 216.49 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 892 | 216.59 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 924 | 216.93 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 932 | 217.00 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 933 | 217.00 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 9 |
| 937 | 217.04 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 968 | 217.31 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 7 |
| 972 | 217.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 973 | 217.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 974 | 217.39 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 977 | 217.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 978 | 217.39 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 7 |
| 984 | 217.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 985 | 217.39 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 986 | 217.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 997 | 217.46 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |