Os05g0550800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os05g0550800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.62 | 0.649 | 7.41 | 2.1 | 1.21 | 0.924 | -1.38 | 3.76 | 1.33 | 2 | 29.21 | 19 | -- | -- |
| 205.08 | 0.672 | 7.34 | 2.75 | 1.27 | 0.811 | -0.0657 | -- | 1.48 | 2 | 29.21 | 19 | -- | -- |
| 195.91 | 0.657 | 7.38 | 2.34 | 1.24 | 0.844 | -- | 2.48 | 1.38 | 1.96 | 29.21 | 19 | -- | -- |
| 204.87 | 0.667 | 7.34 | 2.76 | 1.27 | 0.823 | -- | -- | 1.48 | 1.96 | 29.4 | 17 | -- | -- |
| 257.07 | 0.747 | 7.34 | 2.53 | -- | 2.09 | -- | 3.02 | 1.61 | -- | 29.75 | 13 | -- | -- |
| 214.27 | 0.686 | 7.37 | 2.56 | 1.55 | -- | 0.0222 | -- | 1.32 | 2.02 | -- | -- | -- | -- |
| 214.27 | 0.685 | 7.37 | 2.56 | 1.55 | -- | -- | -- | 1.32 | 2.02 | -- | -- | -- | -- |
| 268.76 | 0.764 | 7.27 | 3.09 | -- | 2.12 | -- | -- | 1.74 | -- | 30.36 | 11 | -- | -- |
| 360.49 | 0.884 | 7.53 | -- | 1.31 | -1.03 | -- | -- | 0.833 | 2.13 | 343.4 | 4006 | -- | -- |
| 357.8 | 0.884 | 7.36 | 2.62 | -- | -- | -- | -- | 1.36 | -- | -- | -- | -- | -- |
| 386.48 | 0.92 | 7.44 | -- | 1.59 | -- | -- | -- | 1.04 | 2.06 | -- | -- | -- | -- |
| 409.32 | 0.942 | 7.55 | -- | -- | -1.83 | -- | -- | 0.518 | -- | 363.6 | 47520 | -- | -- |
| 538.93 | 1.08 | 7.42 | -- | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.10 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 2 | 182.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 12 | 184.36 | humidity | 70 | 90 | > th | dose independent | rect. | 12 | 19 |
| 13 | 184.59 | radiation | 30 | 270 | < th | dose dependent | rect. | 12 | 17 |
| 14 | 184.63 | radiation | 20 | 270 | < th | dose independent | rect. | 12 | 17 |
| 16 | 184.71 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 36 | 185.71 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 19 |
| 46 | 186.14 | temperature | 30 | 270 | < th | dose independent | rect. | 12 | 18 |
| 60 | 186.60 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 20 |
| 110 | 188.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 9 |
| 124 | 188.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 142 | 188.96 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 151 | 189.05 | wind | 7 | 270 | < th | dose independent | rect. | 15 | 10 |
| 163 | 189.24 | humidity | 50 | 270 | > th | dose independent | rect. | 9 | 22 |
| 197 | 189.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 208 | 189.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 226 | 190.10 | temperature | 25 | 30 | > th | dose independent | rect. | 8 | 20 |
| 305 | 190.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 328 | 190.94 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 332 | 190.96 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 7 |
| 339 | 190.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 341 | 191.01 | humidity | 50 | 270 | > th | dose independent | rect. | 10 | 10 |
| 348 | 191.06 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 349 | 191.07 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 353 | 191.10 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 6 |
| 357 | 191.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 394 | 191.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 412 | 191.53 | temperature | 25 | 30 | < th | dose independent | rect. | 12 | 8 |
| 427 | 191.63 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 443 | 191.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 474 | 191.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 531 | 192.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 532 | 192.19 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 539 | 192.21 | temperature | 25 | 90 | > th | dose dependent | sin | 10 | NA |
| 566 | 192.34 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 613 | 192.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 616 | 192.57 | radiation | 10 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 619 | 192.59 | humidity | 50 | 270 | > th | dose independent | rect. | 1 | 16 |
| 667 | 192.79 | radiation | 10 | 90 | < th | dose dependent | sin | 2 | NA |
| 674 | 192.81 | radiation | 10 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 708 | 192.94 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 20 |
| 727 | 193.03 | temperature | 25 | 30 | > th | dose independent | rect. | 16 | 23 |
| 739 | 193.11 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 16 |
| 747 | 193.13 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 22 |
| 775 | 193.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 781 | 193.29 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 786 | 193.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 787 | 193.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 801 | 193.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 18 |
| 824 | 193.48 | temperature | 25 | 10 | < th | dose dependent | sin | 21 | NA |
| 872 | 193.66 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 23 |
| 949 | 193.96 | temperature | 25 | 30 | > th | dose independent | rect. | 13 | 23 |
| 973 | 194.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 9 |