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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0550200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0217) R2 : 0.0562
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.238 (0.0456) R2dN8 : 0.0726 R2N8 : 0.0562
σ : 0.408
deviance : 76.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.65 0.398 3.43 0.221 0.306 0.275 -0.53 -0.652 0.273 9.28 0.2297 2 -- --
72.39 0.396 3.43 0.166 0.278 0.25 0.205 -- 0.271 9.08 0.1753 2 -- --
71.91 0.395 3.43 0.193 0.276 0.242 -- -0.308 0.27 8.87 0.1918 2 -- --
72.51 0.397 3.43 0.184 0.264 0.231 -- -- 0.272 8.76 0.1613 2 -- --
74.08 0.401 3.44 0.177 -- 0.1 -- -0.291 0.261 -- 0.39 2 -- --
73.65 0.402 3.44 0.153 0.184 -- -0.249 -- 0.25 3.75 -- -- -- --
73.83 0.402 3.44 0.157 0.184 -- -- -- 0.251 4.02 -- -- -- --
74.6 0.402 3.44 0.174 -- 0.102 -- -- 0.264 -- 0.17 2 -- --
73.37 0.399 3.43 -- 0.241 0.209 -- -- 0.264 8.42 0.1415 2 -- --
75.68 0.407 3.44 0.165 -- -- -- -- 0.256 -- -- -- -- --
74.48 0.404 3.44 -- 0.188 -- -- -- 0.234 4.01 -- -- -- --
75.37 0.404 3.44 -- -- 0.0969 -- -- 0.243 -- 0.17 2 -- --
76.4 0.408 3.44 -- -- -- -- -- 0.238 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.54 radiation 30.0 10 > th dose independent rect. 10 1
3 69.55 radiation 20.0 10 > th dose independent rect. 8 3
4 69.58 radiation 30.0 90 > th dose independent rect. 9 1
5 69.60 temperature 25.0 10 > th dose independent rect. 9 2
8 69.61 radiation 10.0 90 > th dose dependent rect. 7 3
10 69.63 radiation 30.0 90 > th dose independent rect. 7 3
57 69.65 radiation 20.0 10 > th dose dependent rect. 10 1
91 69.71 radiation 10.0 90 > th dose dependent rect. 9 1
96 69.73 wind 1.0 10 > th dose independent rect. 11 11
97 69.73 radiation 30.0 90 > th dose independent rect. 13 21
104 69.82 wind 1.0 10 > th dose independent rect. 11 9
110 69.86 humidity 90.0 30 < th dose independent rect. 9 2
134 69.89 radiation 10.0 10 > th dose dependent rect. 16 19
196 69.97 temperature 10.0 90 > th dose dependent rect. 21 14
209 69.99 temperature 20.0 10 > th dose dependent rect. 20 8
215 70.02 radiation 40.0 10 > th dose independent sin 11 NA
231 70.06 wind 1.0 90 > th dose independent rect. 10 11
238 70.07 temperature 15.0 10 > th dose dependent rect. 22 13
319 70.10 atmosphere 995.0 30 > th dose independent rect. 11 22
321 70.11 humidity 90.0 30 < th dose dependent rect. 7 4
322 70.12 radiation 40.0 90 > th dose independent sin 11 NA
326 70.13 humidity 90.0 30 < th dose dependent rect. 9 2
331 70.14 radiation 30.0 30 < th dose independent sin 11 NA
388 70.16 humidity 90.0 30 < th dose dependent rect. 22 13
413 70.20 radiation 20.0 90 > th dose dependent sin 11 NA
420 70.21 humidity 90.0 30 < th dose dependent rect. 20 15
441 70.24 precipitation 0.1 30 < th dose independent rect. 11 22
445 70.24 precipitation 0.1 30 < th dose dependent rect. 11 22
503 70.26 temperature 15.0 30 > th dose dependent rect. 9 2
533 70.29 temperature 25.0 30 > th dose independent rect. 22 13
601 70.33 humidity 80.0 30 < th dose dependent rect. 5 6
634 70.36 humidity 80.0 30 < th dose dependent rect. 1 10
642 70.37 temperature 20.0 30 > th dose dependent rect. 22 1
649 70.38 humidity 80.0 90 < th dose independent rect. 7 3
690 70.39 radiation 40.0 14400 < th dose dependent rect. 23 1
711 70.40 wind 9.0 1440 < th dose independent rect. 23 1
712 70.40 temperature 10.0 1440 > th dose independent rect. 23 1
715 70.40 temperature 30.0 1440 < th dose independent rect. 23 1
719 70.40 humidity 50.0 1440 > th dose independent rect. 23 1
729 70.40 atmosphere 995.0 1440 > th dose independent rect. 23 1
730 70.40 radiation 1.0 1440 < th dose independent rect. 23 1
768 70.40 temperature 10.0 1440 > th dose independent rect. 24 23
771 70.40 radiation 1.0 1440 < th dose dependent rect. 23 1
782 70.41 wind 1.0 720 > th dose independent rect. 9 5
784 70.41 wind 1.0 1440 < th dose dependent rect. 13 2
790 70.42 temperature 20.0 30 > th dose independent rect. 22 1
793 70.42 atmosphere 1005.0 30 > th dose dependent rect. 22 1
796 70.43 atmosphere 1010.0 720 < th dose independent rect. 22 1
797 70.43 wind 5.0 10 < th dose independent rect. 9 2
812 70.45 wind 1.0 1440 < th dose independent rect. 12 1
820 70.46 humidity 90.0 30 < th dose independent rect. 22 1
821 70.46 atmosphere 1005.0 30 > th dose independent rect. 22 1
843 70.50 precipitation 0.1 30 < th dose independent rect. 22 1
845 70.50 wind 3.0 14400 < th dose independent rect. 19 4
847 70.50 precipitation 0.1 30 < th dose dependent rect. 22 1
853 70.51 wind 1.0 30 > th dose independent rect. 22 1
913 70.53 wind 9.0 10 < th dose dependent rect. 9 2
928 70.55 wind 3.0 30 < th dose independent rect. 22 1
929 70.55 wind 7.0 30 < th dose independent rect. 22 1
931 70.55 temperature 10.0 30 > th dose independent rect. 22 1
933 70.55 temperature 30.0 30 < th dose independent rect. 22 1
934 70.55 humidity 50.0 30 > th dose independent rect. 22 1
937 70.55 atmosphere 995.0 30 > th dose independent rect. 22 1
938 70.55 atmosphere 1010.0 30 < th dose independent rect. 22 1
940 70.55 radiation 1.0 30 < th dose independent rect. 22 1
945 70.55 temperature 10.0 1440 > th dose independent rect. 10 2
948 70.55 atmosphere 995.0 1440 > th dose independent rect. 10 2
952 70.55 temperature 10.0 1440 > th dose independent rect. 12 22
955 70.55 temperature 10.0 30 > th dose independent rect. 23 23
957 70.55 humidity 90.0 30 < th dose dependent rect. 22 1
958 70.55 radiation 1.0 30 < th dose dependent rect. 22 1
975 70.56 wind 1.0 30 > th dose independent rect. 9 2
978 70.56 radiation 10.0 10 < th dose independent rect. 4 22
979 70.56 wind 9.0 30 < th dose dependent rect. 22 1
982 70.57 temperature 10.0 30 > th dose independent rect. 9 2
984 70.57 humidity 50.0 30 > th dose independent rect. 9 2
986 70.57 atmosphere 995.0 30 > th dose independent rect. 9 2
987 70.57 atmosphere 1015.0 30 < th dose independent rect. 9 2
989 70.57 precipitation 0.1 30 < th dose independent rect. 9 2
993 70.57 temperature 10.0 30 > th dose independent rect. 11 22
996 70.57 precipitation 0.1 30 < th dose dependent rect. 9 2