Os05g0548100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0548100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.84 | 0.3 | 13.1 | 0.3 | 1.05 | -0.444 | 0.762 | -0.328 | 0.0497 | 20.6 | 61.9 | 1165 | -- | -- |
| 40.99 | 0.298 | 13.1 | 0.316 | 1.05 | -0.475 | 0.732 | -- | 0.0452 | 20.6 | 61.2 | 1145 | -- | -- |
| 42.67 | 0.304 | 13.1 | 0.283 | 1.05 | -0.448 | -- | -0.156 | 0.0492 | 20.5 | 61.14 | 1164 | -- | -- |
| 42.71 | 0.304 | 13.1 | 0.29 | 1.05 | -0.463 | -- | -- | 0.0465 | 20.5 | 61.02 | 1156 | -- | -- |
| 101.72 | 0.47 | 13 | 0.246 | -- | -0.326 | -- | -0.276 | 0.0508 | -- | 64 | 1375 | -- | -- |
| 48.02 | 0.325 | 13 | 0.225 | 1.01 | -- | 0.685 | -- | 0.151 | 20.3 | -- | -- | -- | -- |
| 49.47 | 0.329 | 13 | 0.204 | 1.01 | -- | -- | -- | 0.151 | 20.3 | -- | -- | -- | -- |
| 101.86 | 0.47 | 13 | 0.254 | -- | -0.339 | -- | -- | 0.0441 | -- | 63 | 1371 | -- | -- |
| 44.86 | 0.312 | 13.1 | -- | 1.05 | -0.42 | -- | -- | 0.0273 | 20.5 | 61.07 | 1164 | -- | -- |
| 106.35 | 0.482 | 13 | 0.197 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 50.57 | 0.333 | 13 | -- | 1.01 | -- | -- | -- | 0.128 | 20.3 | -- | -- | -- | -- |
| 103.59 | 0.474 | 13 | -- | -- | -0.306 | -- | -- | 0.0271 | -- | 64 | 1371 | -- | -- |
| 107.38 | 0.484 | 13 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.22 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 3 | 40.50 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 11 |
| 4 | 40.50 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 13 |
| 12 | 40.76 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 16 |
| 13 | 40.77 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 7 |
| 15 | 40.83 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 3 |
| 17 | 40.88 | humidity | 80 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 32 | 40.93 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 36 | 40.95 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 38 | 40.96 | humidity | 80 | 720 | < th | dose dependent | rect. | 15 | 7 |
| 62 | 41.06 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 117 | 41.32 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 129 | 41.37 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 4 |
| 130 | 41.38 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 168 | 41.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 179 | 41.54 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 192 | 41.61 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 13 |
| 215 | 41.64 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 249 | 41.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 255 | 41.80 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 4 |
| 271 | 41.81 | temperature | 30 | 720 | > th | dose independent | sin | 13 | NA |
| 282 | 41.83 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 287 | 41.85 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 555 | 42.25 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 613 | 42.35 | temperature | 30 | 720 | < th | dose independent | sin | 13 | NA |