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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0547600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.39 (0.0466) R2 : 0.542
β1 : 1.42 (0.176) R2dD : 0.0743 R2D : 0.105
β2 : 1.17 (0.14) R2dC : 0.101 R2C : 0.236
β3 : 2.91 (0.268) R2dE : 0.186 R2E : 0.374
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.133 (0.104) R2dN8 : 0.00223 R2N8 : 0.00495
σ : 0.861
deviance : 342.02
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_____
C
peak time of C : 15.8
E
wheather : temperature
threshold : 2.611
memory length : 88
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.62
open length of G : 23.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
331.91 0.856 5.3 1.97 1.12 2.63 -0.638 4.13 0.319 15.7 8.868 99 7.62 23.1
341.31 0.86 5.4 1.47 1.13 2.93 0.62 -- 0.14 15.9 3.405 88 7.62 23.3
333.03 0.85 5.31 1.96 1.12 2.64 -- 3.94 0.317 15.7 9.036 100 7.63 23.1
342.02 0.861 5.39 1.42 1.17 2.91 -- -- 0.133 15.8 2.611 88 7.62 23.3
380.17 0.908 5.3 1.77 -- 3.7 -- 4.38 0.236 -- 8.24 109 7.45 23.2
426 0.968 5.31 1.93 2.01 -- 1.06 -- 0.497 16 -- -- -- --
429.21 0.97 5.31 1.95 2.01 -- -- -- 0.503 16 -- -- -- --
391.63 0.922 5.4 1.15 -- 3.99 -- -- -0.00235 -- 3.165 101 7.5 23.3
390.28 0.92 5.42 -- 0.99 3.42 -- -- -0.0393 15.8 4.043 93 7.58 23.3
650.19 1.19 5.3 1.86 -- -- -- -- 0.449 -- -- -- -- --
528.97 1.08 5.36 -- 1.97 -- -- -- 0.286 16 -- -- -- --
423.15 0.958 5.43 -- -- 4.21 -- -- -0.158 -- 3.396 105 7.4 23.4
741.76 1.27 5.35 -- -- -- -- -- 0.242 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 334.73 temperature 10 90 > th dose dependent rect. 8 23
3 335.60 temperature 15 10 > th dose dependent rect. 8 23
6 336.88 temperature 30 90 < th dose dependent rect. 5 14
9 338.36 temperature 30 90 < th dose dependent rect. 5 12
48 347.51 temperature 30 270 < th dose dependent rect. 3 15
50 348.02 temperature 30 90 < th dose dependent sin 0 NA
51 348.03 atmosphere 1000 43200 > th dose independent rect. 4 1
55 348.17 wind 5 43200 < th dose independent rect. 20 2
56 348.24 atmosphere 1000 43200 < th dose independent rect. 4 1
58 348.39 temperature 30 270 < th dose dependent rect. 22 22
59 348.71 temperature 20 90 > th dose dependent rect. 2 23
65 349.10 wind 5 43200 > th dose independent rect. 20 2
81 350.32 temperature 20 90 > th dose dependent rect. 23 23
86 350.55 temperature 30 90 < th dose dependent rect. 5 18
89 350.75 temperature 20 90 > th dose dependent rect. 21 23
93 350.90 temperature 20 10 > th dose dependent rect. 21 23
98 351.09 temperature 20 10 > th dose dependent rect. 23 23
103 351.24 temperature 20 90 > th dose dependent rect. 23 20
104 351.27 temperature 30 30 < th dose dependent rect. 5 23
105 351.32 temperature 20 90 > th dose dependent no NA NA
114 351.67 temperature 30 270 < th dose dependent rect. 1 20
123 352.06 temperature 10 90 > th dose dependent sin 0 NA
125 352.22 wind 3 43200 > th dose dependent rect. 20 2
135 352.45 temperature 30 270 < th dose dependent rect. 1 22
139 352.58 temperature 10 90 > th dose dependent no NA NA
142 352.64 temperature 25 1440 > th dose dependent rect. 8 2
146 352.78 temperature 20 10 > th dose dependent rect. 23 21
159 353.41 temperature 25 720 > th dose dependent rect. 19 15
167 353.49 temperature 25 1440 > th dose dependent rect. 4 6
172 353.55 temperature 10 10 > th dose dependent sin 23 NA
178 353.65 temperature 30 1440 < th dose independent rect. 11 1
201 354.00 temperature 15 90 > th dose dependent rect. 8 11
205 354.01 temperature 20 720 > th dose dependent rect. 17 21
218 354.16 temperature 20 90 > th dose dependent rect. 3 16
223 354.21 temperature 25 720 > th dose dependent rect. 17 19
228 354.31 atmosphere 1000 43200 > th dose independent rect. 16 1
236 354.45 temperature 20 10 > th dose dependent rect. 3 17
247 354.65 atmosphere 1000 43200 > th dose independent rect. 14 3
256 354.71 temperature 30 1440 > th dose independent rect. 11 1
270 354.88 temperature 25 1440 > th dose dependent sin 5 NA
284 354.96 temperature 20 1440 > th dose dependent rect. 13 23
300 355.09 temperature 20 1440 > th dose dependent rect. 2 21
321 355.24 temperature 30 1440 < th dose independent rect. 11 3
328 355.25 temperature 30 720 < th dose dependent rect. 18 22
345 355.31 temperature 10 720 > th dose dependent rect. 22 22
347 355.32 atmosphere 1000 43200 > th dose independent rect. 13 19
349 355.32 temperature 20 1440 > th dose dependent rect. 6 22
350 355.32 temperature 20 1440 > th dose dependent rect. 22 22
361 355.35 atmosphere 1000 43200 > th dose independent rect. 21 11
362 355.35 atmosphere 1000 43200 > th dose independent rect. 21 20
376 355.37 temperature 20 1440 > th dose dependent no NA NA
388 355.40 atmosphere 1000 43200 > th dose independent rect. 16 16
398 355.41 temperature 20 1440 > th dose dependent rect. 9 23
400 355.42 atmosphere 1000 43200 < th dose independent rect. 21 11
403 355.42 atmosphere 1000 43200 > th dose independent rect. 3 21
436 355.48 atmosphere 1000 43200 > th dose independent rect. 13 11
441 355.49 atmosphere 1000 43200 < th dose independent rect. 18 14
442 355.49 atmosphere 1000 43200 < th dose independent rect. 16 16
459 355.51 atmosphere 1000 43200 < th dose independent rect. 14 18
469 355.51 temperature 10 720 > th dose dependent rect. 13 23
511 355.57 atmosphere 1000 43200 > th dose independent rect. 3 14
561 355.60 atmosphere 1000 43200 > th dose independent rect. 16 23
594 355.64 atmosphere 1000 43200 > th dose independent no NA NA
619 355.65 atmosphere 1000 43200 > th dose independent rect. 6 23
634 355.68 atmosphere 1000 43200 < th dose independent sin 9 NA
635 355.68 atmosphere 1000 43200 > th dose independent rect. 16 8
666 355.70 atmosphere 1000 43200 > th dose independent sin 9 NA
685 355.71 atmosphere 1000 43200 < th dose independent rect. 3 21
694 355.72 atmosphere 1000 43200 > th dose independent rect. 18 14
732 355.75 atmosphere 1000 43200 < th dose independent rect. 20 21
741 355.76 atmosphere 1000 43200 < th dose independent rect. 14 10
759 355.77 atmosphere 1000 43200 < th dose independent rect. 20 23
776 355.79 atmosphere 1000 43200 < th dose independent rect. 16 8
786 355.79 atmosphere 1000 43200 < th dose independent rect. 18 23
825 355.82 atmosphere 1000 43200 > th dose independent sin 19 NA
830 355.82 atmosphere 1000 43200 < th dose independent rect. 16 23
848 355.84 atmosphere 1000 43200 < th dose independent rect. 14 3
858 355.85 atmosphere 1000 43200 < th dose independent no NA NA
888 355.87 atmosphere 1000 43200 > th dose independent rect. 6 18
892 355.87 atmosphere 1000 43200 < th dose independent rect. 6 23