FiT-DB / Search/ Help/ Sample detail

Os05g0546500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA-binding TFAR19-related protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0198) R2 : 0.151
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.375 (0.0416) R2dN8 : 0.195 R2N8 : 0.151
σ : 0.372
deviance : 63.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.93 0.282 14 -0.868 0.405 0.503 0.278 -1.74 0.146 22.1 19.48 1777 -- --
37.01 0.283 14 -0.814 0.414 1.03 0.199 -- 0.14 21.9 18.5 3271 -- --
36.2 0.28 14 -0.877 0.407 0.507 -- -1.74 0.145 22 19.48 1748 -- --
37.21 0.284 14 -0.836 0.408 1.07 -- -- 0.14 21.9 18.4 3265 -- --
45.22 0.313 14 -0.932 -- 0.514 -- -1.56 0.123 -- 19.44 2053 -- --
50.73 0.334 14 -0.321 0.401 -- 0.33 -- 0.339 22.1 -- -- -- --
51.15 0.335 14 -0.333 0.4 -- -- -- 0.338 22 -- -- -- --
46.33 0.317 14 -0.855 -- 1.11 -- -- 0.136 -- 18.46 3489 -- --
49.95 0.329 14 -- 0.396 0.413 -- -- 0.302 21.8 20.7 1543 -- --
60.78 0.364 13.9 -0.329 -- -- -- -- 0.338 -- -- -- -- --
54.08 0.344 13.9 -- 0.399 -- -- -- 0.375 21.9 -- -- -- --
57.39 0.353 13.9 -- -- 0.511 -- -- 0.309 -- 19.39 860 -- --
63.63 0.372 13.9 -- -- -- -- -- 0.375 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.81 wind 7.0 43200 > th dose independent rect. 3 10
2 33.86 wind 7.0 43200 < th dose independent rect. 3 10
3 33.87 wind 7.0 43200 > th dose independent rect. 21 16
10 33.93 wind 7.0 43200 < th dose independent rect. 21 16
15 34.02 temperature 20.0 4320 > th dose dependent rect. 10 1
16 34.02 wind 7.0 43200 > th dose dependent rect. 10 3
24 34.09 wind 7.0 43200 > th dose independent rect. 7 6
37 34.16 wind 7.0 43200 < th dose independent rect. 7 6
38 34.20 humidity 90.0 14400 > th dose dependent rect. 24 17
42 34.22 humidity 90.0 14400 > th dose dependent rect. 12 17
45 34.25 wind 9.0 43200 < th dose independent rect. 10 2
48 34.27 wind 7.0 43200 > th dose independent rect. 9 3
84 34.39 wind 7.0 43200 < th dose independent sin 7 NA
88 34.40 wind 7.0 43200 > th dose independent sin 7 NA
114 34.44 humidity 90.0 43200 > th dose dependent rect. 9 5
116 34.45 humidity 90.0 14400 > th dose dependent sin 5 NA
117 34.45 temperature 30.0 4320 < th dose dependent rect. 9 1
118 34.45 humidity 80.0 43200 > th dose dependent rect. 12 1
124 34.46 wind 5.0 43200 > th dose dependent rect. 1 13
128 34.48 temperature 20.0 14400 < th dose independent rect. 19 7
140 34.50 precipitation 0.1 43200 < th dose independent rect. 6 5
145 34.50 precipitation 0.1 43200 < th dose dependent rect. 6 5
146 34.50 wind 5.0 43200 > th dose dependent rect. 3 10
161 34.52 precipitation 0.1 43200 > th dose independent rect. 6 7
164 34.52 precipitation 0.1 43200 > th dose dependent rect. 6 7
169 34.52 wind 5.0 43200 > th dose dependent rect. 21 17
172 34.53 precipitation 0.1 43200 < th dose independent rect. 6 7
177 34.53 precipitation 0.1 43200 < th dose dependent rect. 6 7
194 34.56 temperature 20.0 14400 > th dose independent rect. 18 9
201 34.57 precipitation 0.1 43200 > th dose independent rect. 6 5
209 34.58 precipitation 0.1 43200 > th dose dependent rect. 6 5
222 34.60 humidity 90.0 43200 < th dose independent rect. 10 3
235 34.61 temperature 25.0 43200 < th dose dependent rect. 9 1
280 34.66 humidity 90.0 43200 > th dose independent rect. 9 5
336 34.72 humidity 90.0 43200 < th dose dependent rect. 8 1
351 34.73 humidity 90.0 14400 > th dose dependent sin 13 NA
410 34.79 temperature 20.0 43200 < th dose independent rect. 20 1
421 34.80 wind 5.0 43200 > th dose dependent sin 7 NA
431 34.81 temperature 20.0 43200 > th dose independent rect. 7 1
442 34.83 temperature 20.0 43200 > th dose independent rect. 20 1
450 34.84 temperature 20.0 14400 > th dose independent sin 13 NA
451 34.84 temperature 20.0 43200 < th dose independent rect. 7 1
452 34.84 humidity 90.0 43200 < th dose independent rect. 12 1
458 34.85 humidity 90.0 43200 > th dose independent rect. 12 1
471 34.86 temperature 20.0 14400 < th dose independent sin 13 NA
473 34.86 temperature 20.0 43200 > th dose independent rect. 19 3
477 34.86 temperature 20.0 14400 > th dose independent rect. 18 15
493 34.87 humidity 90.0 14400 > th dose dependent no NA NA
502 34.88 temperature 20.0 43200 > th dose independent rect. 17 5
515 34.89 temperature 20.0 14400 < th dose independent rect. 18 15
519 34.89 humidity 60.0 43200 < th dose dependent rect. 13 1
523 34.90 humidity 90.0 43200 > th dose independent rect. 10 1
581 34.95 humidity 70.0 43200 > th dose independent rect. 24 14
589 34.95 radiation 10.0 4320 > th dose dependent rect. 17 15
595 34.96 temperature 25.0 14400 < th dose dependent rect. 21 1
602 34.97 humidity 70.0 43200 > th dose independent rect. 1 11
708 35.03 humidity 70.0 43200 > th dose independent rect. 17 19
722 35.04 wind 5.0 43200 > th dose dependent rect. 21 10
728 35.05 humidity 70.0 43200 > th dose independent rect. 17 17
731 35.05 radiation 10.0 4320 > th dose dependent rect. 5 3
767 35.07 humidity 70.0 43200 > th dose independent sin 5 NA
793 35.08 wind 7.0 43200 > th dose independent rect. 21 7
794 35.08 wind 7.0 43200 < th dose independent rect. 21 7
804 35.09 radiation 30.0 43200 < th dose independent rect. 5 2
813 35.09 humidity 70.0 43200 > th dose independent rect. 18 21
834 35.10 humidity 70.0 43200 < th dose independent rect. 17 16
858 35.11 wind 3.0 43200 > th dose dependent rect. 5 1
862 35.11 wind 7.0 43200 > th dose dependent rect. 21 3
874 35.12 wind 7.0 43200 < th dose independent rect. 21 10
907 35.14 wind 7.0 43200 > th dose independent rect. 21 10
915 35.14 humidity 70.0 43200 < th dose independent rect. 23 16
924 35.14 wind 7.0 43200 > th dose dependent rect. 21 7
940 35.15 temperature 20.0 43200 > th dose independent rect. 7 18
976 35.17 humidity 70.0 43200 < th dose independent rect. 17 9
988 35.17 humidity 70.0 43200 < th dose independent rect. 17 18