Os05g0545400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0545400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 320.51 | 0.841 | 6.11 | -1.8 | 0.178 | 1.64 | 2.75 | -1.23 | -0.712 | 13.6 | 1.945 | 97 | -- | -- |
| 321.84 | 0.836 | 6.11 | -1.78 | 0.193 | 1.65 | 2.14 | -- | -0.711 | 13.9 | 1.96 | 97 | -- | -- |
| 332.33 | 0.849 | 6.11 | -1.75 | 0.0926 | 1.78 | -- | 1.82 | -0.716 | 14.9 | -6.348 | 115 | -- | -- |
| 338.17 | 0.856 | 6.1 | -1.78 | 0.184 | 1.64 | -- | -- | -0.701 | 16.2 | 0.75 | 114 | -- | -- |
| 332.56 | 0.849 | 6.11 | -1.77 | -- | 1.87 | -- | 1.75 | -0.709 | -- | -4.944 | 115 | -- | -- |
| 361.48 | 0.891 | 6.08 | -1.79 | 1.09 | -- | 2.02 | -- | -0.62 | 13.5 | -- | -- | -- | -- |
| 377.97 | 0.91 | 6.07 | -1.72 | 1.09 | -- | -- | -- | -0.609 | 13.6 | -- | -- | -- | -- |
| 339.19 | 0.858 | 6.1 | -1.74 | -- | 1.83 | -- | -- | -0.707 | -- | -3.771 | 119 | -- | -- |
| 416.44 | 0.95 | 6.06 | -- | 0.269 | 1.71 | -- | -- | -0.5 | 16 | 1.99 | 97 | -- | -- |
| 450.1 | 0.991 | 6.09 | -1.76 | -- | -- | -- | -- | -0.632 | -- | -- | -- | -- | -- |
| 455.77 | 0.999 | 6.03 | -- | 1.12 | -- | -- | -- | -0.417 | 13.6 | -- | -- | -- | -- |
| 418.85 | 0.953 | 6.06 | -- | -- | 1.84 | -- | -- | -0.516 | -- | -6.253 | 114 | -- | -- |
| 531.97 | 1.08 | 6.04 | -- | -- | -- | -- | -- | -0.437 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 308.15 | radiation | 20 | 30 | < th | dose independent | rect. | 4 | 18 |
| 4 | 309.15 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 7 | 310.18 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 12 | 311.51 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 17 |
| 14 | 311.81 | humidity | 70 | 10 | > th | dose independent | rect. | 4 | 18 |
| 26 | 313.29 | radiation | 20 | 90 | < th | dose dependent | sin | 0 | NA |
| 28 | 313.50 | radiation | 40 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 29 | 313.68 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 30 | 313.69 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 36 | 314.13 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 4 | 17 |
| 42 | 314.76 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 48 | 315.14 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 49 | 315.20 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 21 |
| 55 | 315.28 | humidity | 50 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 58 | 315.34 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 77 | 315.96 | radiation | 40 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 90 | 316.42 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 105 | 316.82 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 119 | 317.11 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 22 |
| 128 | 317.34 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 131 | 317.35 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 140 | 317.55 | humidity | 50 | 10 | > th | dose independent | rect. | 4 | 18 |
| 146 | 317.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 150 | 317.72 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 9 |
| 177 | 318.00 | humidity | 70 | 10 | > th | dose independent | rect. | 4 | 15 |
| 189 | 318.38 | radiation | 20 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 199 | 318.59 | atmosphere | 995 | 90 | > th | dose independent | rect. | 4 | 17 |
| 204 | 318.67 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 208 | 318.75 | radiation | 1 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 223 | 319.01 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 8 | 5 |
| 225 | 319.02 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 231 | 319.08 | radiation | 20 | 90 | < th | dose independent | sin | 0 | NA |
| 232 | 319.08 | humidity | 70 | 10 | > th | dose independent | rect. | 24 | 22 |
| 238 | 319.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 256 | 319.56 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 268 | 319.73 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 13 |
| 270 | 319.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 280 | 319.80 | humidity | 50 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 310 | 320.17 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 10 | 5 |
| 312 | 320.22 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 325 | 320.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 329 | 320.26 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 336 | 320.35 | temperature | 30 | 10 | < th | dose independent | rect. | 4 | 18 |
| 357 | 320.55 | humidity | 70 | 270 | < th | dose independent | rect. | 10 | 1 |
| 373 | 320.59 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 400 | 320.76 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 407 | 320.80 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 423 | 320.94 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 447 | 321.12 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 514 | 321.20 | wind | 7 | 90 | < th | dose independent | rect. | 4 | 17 |
| 540 | 321.43 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 594 | 321.82 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 1 | 20 |
| 626 | 322.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 21 |
| 627 | 322.02 | temperature | 30 | 10 | < th | dose independent | rect. | 13 | 21 |
| 642 | 322.05 | radiation | 20 | 90 | > th | dose independent | rect. | 9 | 23 |
| 674 | 322.25 | temperature | 15 | 90 | > th | dose independent | rect. | 4 | 17 |
| 701 | 322.38 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 702 | 322.40 | radiation | 20 | 10 | < th | dose independent | rect. | 4 | 13 |
| 748 | 322.56 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 783 | 322.72 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |
| 797 | 322.80 | radiation | 20 | 90 | > th | dose independent | rect. | 14 | 23 |
| 801 | 322.81 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 13 | 20 |
| 823 | 322.85 | temperature | 30 | 90 | < th | dose independent | rect. | 13 | 20 |
| 864 | 323.05 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 885 | 323.14 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 958 | 323.41 | temperature | 30 | 10 | < th | dose independent | rect. | 13 | 9 |
| 976 | 323.52 | radiation | 20 | 30 | < th | dose independent | rect. | 7 | 15 |