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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0545300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0554) R2 : 0.415
β1 : -2.59 (0.202) R2dD : 0.222 R2D : 0.122
β2 : 1.89 (0.152) R2dC : 0.266 R2C : 0.0916
β3 : -1.06 (0.148) R2dE : 0.0866 R2E : -0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.862 (0.118) R2dN8 : 0.0912 R2N8 : 0.0088
σ : 1.03
deviance : 489.13
__
_____
C
peak time of C : 22.4
E
wheather : radiation
threshold : 12.53
memory length : 251
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
466.22 1.01 4.12 -2.58 1.68 -1.13 -2.27 -0.653 -0.848 22.3 19.75 310 -- --
466.64 1.01 4.12 -2.59 1.67 -1.18 -2.53 -- -0.864 22.4 19.75 322 -- --
479.85 1.02 4.13 -2.61 1.91 -0.961 -- -1.31 -0.811 22.1 13.75 243 -- --
489.13 1.03 4.13 -2.59 1.89 -1.06 -- -- -0.862 22.4 12.53 251 -- --
538.36 1.08 4.27 -2.91 -- -1.99 -- 1.21 -1.47 -- 2.47 1091 -- --
496.25 1.04 4.1 -2.52 1.6 -- -2.25 -- -0.751 20.8 -- -- -- --
512.34 1.06 4.1 -2.44 1.62 -- -- -- -0.748 20.5 -- -- -- --
525.24 1.07 4.1 -2.54 -- -2.28 -- -- -0.92 -- 3.667 1064 -- --
647.96 1.19 4.04 -- 1.87 -1.05 -- -- -0.515 22.4 9.739 314 -- --
658.76 1.2 4.06 -2.45 -- -- -- -- -0.763 -- -- -- -- --
669.67 1.21 4.04 -- 1.63 -- -- -- -0.476 20.4 -- -- -- --
681.83 1.22 4.05 -- -- -2.32 -- -- -0.693 -- 6.809 1039 -- --
817.12 1.33 3.99 -- -- -- -- -- -0.491 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 454.61 radiation 20.0 720 < th dose dependent rect. 24 8
3 455.63 humidity 90.0 270 < th dose independent rect. 2 15
6 456.79 humidity 50.0 720 > th dose dependent rect. 24 10
9 457.66 radiation 10.0 720 < th dose dependent rect. 24 13
13 458.02 radiation 10.0 720 < th dose independent rect. 24 8
14 458.25 humidity 80.0 720 > th dose dependent rect. 24 9
15 458.29 radiation 1.0 270 > th dose dependent rect. 10 22
27 459.45 temperature 25.0 720 > th dose dependent rect. 18 3
28 459.55 humidity 50.0 720 > th dose dependent rect. 24 8
38 460.16 humidity 90.0 720 > th dose independent rect. 1 1
40 460.32 radiation 20.0 270 > th dose independent rect. 10 22
46 460.84 radiation 1.0 720 > th dose dependent rect. 18 13
49 460.89 radiation 20.0 270 > th dose independent rect. 10 6
53 461.08 temperature 25.0 720 > th dose dependent rect. 18 11
57 461.17 temperature 25.0 720 > th dose dependent rect. 18 5
60 461.23 temperature 25.0 720 > th dose dependent rect. 20 1
61 461.27 temperature 25.0 270 < th dose independent rect. 11 17
70 461.52 humidity 90.0 720 > th dose independent rect. 24 8
71 461.54 temperature 25.0 270 > th dose dependent rect. 12 2
90 461.80 radiation 20.0 270 > th dose independent rect. 11 4
91 461.82 humidity 90.0 720 > th dose independent rect. 24 3
94 461.89 humidity 90.0 720 > th dose independent rect. 24 11
99 461.97 wind 5.0 90 > th dose dependent rect. 4 3
100 462.01 temperature 25.0 90 > th dose dependent rect. 13 4
104 462.13 temperature 25.0 90 < th dose independent rect. 13 16
110 462.24 temperature 10.0 30 > th dose dependent rect. 24 13
112 462.28 humidity 90.0 720 > th dose independent rect. 24 15
114 462.32 radiation 1.0 270 > th dose dependent rect. 10 7
121 462.39 radiation 1.0 720 > th dose dependent rect. 5 2
125 462.45 radiation 20.0 90 < th dose independent sin 14 NA
138 462.48 radiation 10.0 270 > th dose independent rect. 13 1
140 462.49 wind 5.0 90 > th dose dependent rect. 3 5
148 462.60 wind 7.0 720 < th dose dependent rect. 24 2
180 462.76 temperature 25.0 90 < th dose independent rect. 15 14
181 462.78 radiation 20.0 90 > th dose independent rect. 13 19
183 462.81 humidity 80.0 720 < th dose dependent rect. 19 2
185 462.82 humidity 70.0 720 > th dose dependent rect. 24 3
187 462.85 radiation 1.0 270 > th dose dependent rect. 12 3
189 462.85 radiation 1.0 90 > th dose dependent rect. 13 19
191 462.89 wind 5.0 90 > th dose independent rect. 4 3
202 463.03 wind 5.0 90 > th dose independent rect. 3 5
219 463.09 precipitation 0.1 720 < th dose independent rect. 15 21
220 463.09 precipitation 0.1 720 < th dose dependent rect. 15 21
312 463.74 wind 3.0 720 < th dose independent rect. 24 1
336 463.83 radiation 10.0 270 > th dose dependent sin 19 NA
343 463.91 temperature 25.0 720 < th dose independent rect. 17 7
369 464.04 wind 1.0 720 > th dose independent rect. 15 6
374 464.13 humidity 70.0 270 < th dose independent rect. 13 1
377 464.14 radiation 20.0 270 > th dose independent sin 20 NA
386 464.27 radiation 30.0 270 < th dose dependent rect. 6 22
389 464.31 humidity 70.0 270 < th dose independent rect. 11 4
394 464.32 radiation 40.0 90 < th dose dependent sin 14 NA
398 464.40 radiation 10.0 90 > th dose dependent sin 14 NA
400 464.41 humidity 80.0 720 > th dose dependent sin 6 NA
402 464.42 temperature 20.0 10 > th dose dependent rect. 13 5
407 464.46 radiation 10.0 270 < th dose independent rect. 7 21
411 464.52 humidity 80.0 270 < th dose dependent rect. 13 1
417 464.53 temperature 10.0 10 > th dose dependent rect. 20 17
425 464.61 radiation 20.0 90 > th dose independent sin 14 NA
428 464.62 temperature 25.0 720 > th dose independent rect. 18 3
431 464.65 radiation 20.0 270 < th dose independent rect. 16 22
432 464.66 radiation 20.0 270 < th dose independent rect. 17 20
433 464.67 atmosphere 1015.0 30 < th dose dependent rect. 24 13
449 464.78 temperature 20.0 30 > th dose dependent rect. 20 10
459 464.83 radiation 40.0 270 < th dose dependent rect. 16 21
487 465.03 temperature 10.0 720 > th dose dependent rect. 24 1
521 465.17 temperature 25.0 720 > th dose independent rect. 20 1
537 465.29 temperature 10.0 270 > th dose dependent rect. 17 17
544 465.32 humidity 90.0 90 < th dose dependent rect. 13 4
554 465.38 temperature 25.0 30 > th dose dependent rect. 20 8
562 465.41 precipitation 0.1 720 < th dose independent rect. 17 19
565 465.41 precipitation 0.1 720 < th dose dependent rect. 17 19
572 465.44 humidity 80.0 720 < th dose independent rect. 19 1
593 465.52 radiation 30.0 14400 < th dose independent rect. 18 13
594 465.53 radiation 30.0 14400 < th dose independent rect. 20 11
641 465.65 atmosphere 1015.0 270 < th dose dependent rect. 13 1
653 465.73 atmosphere 1015.0 720 < th dose independent rect. 24 3
655 465.74 temperature 10.0 30 > th dose dependent rect. 13 11
676 465.79 precipitation 0.1 720 < th dose independent rect. 15 6
678 465.79 precipitation 0.1 720 < th dose dependent rect. 15 6
684 465.85 humidity 90.0 720 > th dose independent rect. 24 5
763 466.10 humidity 90.0 270 < th dose dependent rect. 1 15
764 466.11 humidity 70.0 270 < th dose independent rect. 10 6
775 466.17 radiation 10.0 720 > th dose independent rect. 6 2
783 466.20 humidity 90.0 270 < th dose independent rect. 1 6
853 466.43 humidity 90.0 10 < th dose dependent rect. 13 5
856 466.45 atmosphere 1015.0 720 < th dose independent rect. 24 5
896 466.60 precipitation 0.1 10 < th dose independent rect. 24 13
898 466.60 precipitation 0.1 10 < th dose dependent rect. 24 13
928 466.73 atmosphere 1015.0 90 < th dose dependent rect. 12 5
933 466.77 atmosphere 1015.0 30 < th dose dependent rect. 20 16
936 466.80 temperature 15.0 270 > th dose independent rect. 24 12
942 466.82 wind 1.0 270 > th dose independent rect. 3 13
956 466.89 temperature 30.0 90 > th dose independent rect. 12 5
958 466.90 precipitation 0.1 270 < th dose independent rect. 24 12
960 466.90 precipitation 0.1 270 < th dose dependent rect. 24 12
970 466.94 temperature 25.0 270 < th dose independent sin 14 NA
997 467.05 humidity 90.0 720 > th dose independent sin 6 NA