Os05g0545200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pleckstrin homology-type domain containing protein.
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Os05g0545200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pleckstrin homology-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 294.98 | 0.807 | 3.08 | -0.72 | 0.0973 | 6.01 | 0.535 | -11.9 | 0.0349 | 12.1 | 49.83 | 4017 | -- | -- |
| 320.34 | 0.84 | 2.9 | 0.268 | 0.0839 | -0.479 | -0.648 | -- | -0.078 | 20.6 | 49.83 | 4017 | -- | -- |
| 295.56 | 0.801 | 3.08 | -0.691 | 0.136 | 5.94 | -- | -11.8 | 0.0366 | 14.9 | 49.87 | 4017 | -- | -- |
| 305.15 | 0.814 | 2.88 | -0.135 | 0.0817 | 1.15 | -- | -- | -0.0207 | 21.2 | 51.41 | 4022 | -- | -- |
| 296.75 | 0.802 | 3.08 | -0.674 | -- | 5.98 | -- | -12 | 0.0271 | -- | 49.73 | 4017 | -- | -- |
| 321.03 | 0.84 | 2.9 | 0.248 | 0.0959 | -- | -0.605 | -- | -0.0748 | 20.3 | -- | -- | -- | -- |
| 321.97 | 0.84 | 2.9 | 0.268 | 0.116 | -- | -- | -- | -0.0736 | 18.3 | -- | -- | -- | -- |
| 304.92 | 0.813 | 2.87 | -0.0959 | -- | 1.17 | -- | -- | 0.00117 | -- | 52 | 4017 | -- | -- |
| 304.49 | 0.813 | 2.88 | -- | 0.139 | 1.06 | -- | -- | -0.00955 | 17.4 | 52 | 4027 | -- | -- |
| 322.68 | 0.839 | 2.89 | 0.265 | -- | -- | -- | -- | -0.0761 | -- | -- | -- | -- | -- |
| 323.87 | 0.842 | 2.9 | -- | 0.113 | -- | -- | -- | -0.104 | 18.5 | -- | -- | -- | -- |
| 305.13 | 0.814 | 2.88 | -- | -- | 1.13 | -- | -- | 0.00411 | -- | 52 | 4017 | -- | -- |
| 324.53 | 0.841 | 2.9 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 287.33 | humidity | 60 | 30 | < th | dose independent | rect. | 16 | 2 |
| 18 | 290.49 | humidity | 60 | 30 | < th | dose dependent | rect. | 16 | 2 |
| 55 | 293.47 | humidity | 60 | 10 | < th | dose independent | sin | 12 | NA |
| 150 | 295.21 | temperature | 30 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 151 | 295.28 | temperature | 30 | 30 | > th | dose independent | rect. | 17 | 1 |
| 154 | 295.35 | humidity | 50 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 155 | 295.46 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 157 | 295.51 | humidity | 60 | 10 | > th | dose independent | sin | 12 | NA |
| 160 | 295.58 | humidity | 60 | 30 | < th | dose dependent | sin | 13 | NA |
| 206 | 296.24 | temperature | 30 | 10 | > th | dose independent | rect. | 15 | 3 |
| 238 | 296.96 | atmosphere | 1010 | 90 | > th | dose independent | rect. | 8 | 1 |
| 239 | 296.96 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 9 | 1 |
| 293 | 297.03 | humidity | 50 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 525 | 298.55 | humidity | 50 | 4320 | < th | dose dependent | rect. | 12 | 6 |
| 545 | 298.58 | humidity | 50 | 4320 | < th | dose dependent | rect. | 13 | 3 |
| 551 | 298.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 3 |
| 553 | 298.74 | humidity | 50 | 4320 | < th | dose dependent | sin | 22 | NA |
| 616 | 298.91 | humidity | 50 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 618 | 298.93 | humidity | 50 | 4320 | < th | dose dependent | no | NA | NA |
| 924 | 299.93 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 926 | 300.00 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 929 | 300.00 | radiation | 1 | 30 | > th | dose dependent | rect. | 15 | 3 |
| 941 | 300.02 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 943 | 300.03 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 958 | 300.03 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 1 |