Os05g0543700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chaperone protein dnaJ.
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Os05g0543700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chaperone protein dnaJ.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.16 | 0.226 | 13.3 | -1.51 | 0.93 | 0.563 | 0.257 | -2.1 | -0.092 | 8.69 | 26.2 | 1263 | -- | -- |
| 24.76 | 0.232 | 13.2 | -1.01 | 0.971 | 0.378 | 0.32 | -- | -0.0013 | 8.51 | 25.1 | 2111 | -- | -- |
| 23.36 | 0.225 | 13.3 | -1.5 | 0.934 | 0.567 | -- | -2.14 | -0.0899 | 8.68 | 26.18 | 1230 | -- | -- |
| 24.48 | 0.23 | 13.2 | -1 | 0.932 | 0.356 | -- | -- | -0.074 | 8.51 | 26.05 | 7987 | -- | -- |
| 70.48 | 0.391 | 13.3 | -1.38 | -- | 0.456 | -- | -1.54 | -0.0535 | -- | 26.28 | 1401 | -- | -- |
| 29.04 | 0.253 | 13.2 | -0.888 | 0.906 | -- | 0.268 | -- | 0.038 | 8.46 | -- | -- | -- | -- |
| 29.27 | 0.253 | 13.2 | -0.88 | 0.905 | -- | -- | -- | 0.0378 | 8.44 | -- | -- | -- | -- |
| 70.32 | 0.391 | 13.3 | -1 | -- | 0.333 | -- | -- | -0.0779 | -- | 26.4 | 8671 | -- | -- |
| 48.73 | 0.325 | 13.2 | -- | 0.902 | 0.172 | -- | -- | 0.0869 | 8.51 | 30.2 | 9146 | -- | -- |
| 75.02 | 0.405 | 13.2 | -0.876 | -- | -- | -- | -- | 0.0469 | -- | -- | -- | -- | -- |
| 49.69 | 0.33 | 13.2 | -- | 0.902 | -- | -- | -- | 0.136 | 8.51 | -- | -- | -- | -- |
| 87.21 | 0.435 | 13.2 | -- | -- | -0.397 | -- | -- | 0.307 | -- | 23.09 | 46853 | -- | -- |
| 95.25 | 0.456 | 13.2 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 3 | 22.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 13 | 23.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 16 | 23.26 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 17 | 23.26 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 20 | 23.28 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 23 | 23.29 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 27 | 23.30 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 33 | 23.31 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 37 | 23.32 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 38 | 23.32 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 49 | 23.32 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 52 | 23.32 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 53 | 23.33 | wind | 7 | 43200 | < th | dose independent | sin | 3 | NA |
| 57 | 23.33 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 68 | 23.34 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 69 | 23.34 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 70 | 23.34 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 79 | 23.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 80 | 23.35 | wind | 7 | 43200 | > th | dose independent | sin | 3 | NA |
| 86 | 23.35 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 104 | 23.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 112 | 23.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 114 | 23.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 132 | 23.38 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 144 | 23.39 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 158 | 23.40 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 165 | 23.40 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 169 | 23.40 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 14 |
| 170 | 23.41 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 182 | 23.41 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 183 | 23.41 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 185 | 23.41 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 21 |
| 186 | 23.41 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 202 | 23.41 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 207 | 23.41 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 212 | 23.42 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 218 | 23.42 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 18 |
| 219 | 23.42 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 223 | 23.42 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 251 | 23.42 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 255 | 23.42 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 268 | 23.42 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 271 | 23.43 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 272 | 23.43 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 273 | 23.43 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 277 | 23.43 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 279 | 23.43 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 327 | 23.43 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 365 | 23.44 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 371 | 23.44 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 393 | 23.45 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 403 | 23.45 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 407 | 23.45 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 426 | 23.46 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 463 | 23.47 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 475 | 23.47 | wind | 7 | 43200 | > th | dose dependent | sin | 20 | NA |
| 529 | 23.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 536 | 23.49 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 548 | 23.49 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 568 | 23.49 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 583 | 23.50 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 587 | 23.50 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 603 | 23.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 625 | 23.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 698 | 23.52 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 699 | 23.52 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 821 | 23.55 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 843 | 23.55 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 875 | 23.56 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 904 | 23.57 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 955 | 23.59 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 960 | 23.59 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 12 |