Os05g0542300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0542300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 300.01 | 0.814 | 9.43 | -5.9 | 1.68 | 2.86 | 2.28 | 0.298 | -2.38 | 7.42 | 22.9 | 5240 | -- | -- |
| 300.19 | 0.807 | 9.43 | -5.98 | 1.68 | 2.85 | 2.28 | -- | -2.38 | 7.4 | 23 | 5240 | -- | -- |
| 312.68 | 0.824 | 9.43 | -5.82 | 1.69 | 2.86 | -- | 0.429 | -2.4 | 7.06 | 22.84 | 5339 | -- | -- |
| 312.78 | 0.824 | 9.44 | -5.93 | 1.71 | 2.82 | -- | -- | -2.4 | 7.06 | 22.97 | 5250 | -- | -- |
| 455.69 | 0.994 | 9.46 | -5.63 | -- | 2.85 | -- | 0.676 | -2.35 | -- | 23 | 4282 | -- | -- |
| 568.57 | 1.12 | 9.19 | -4.48 | 1.7 | -- | 1.95 | -- | -1.3 | 6.95 | -- | -- | -- | -- |
| 577.32 | 1.13 | 9.2 | -4.45 | 1.72 | -- | -- | -- | -1.31 | 6.65 | -- | -- | -- | -- |
| 455.8 | 0.994 | 9.47 | -5.86 | -- | 2.82 | -- | -- | -2.36 | -- | 22.9 | 4279 | -- | -- |
| 1016.81 | 1.49 | 9.15 | -- | 1.66 | 1.3 | -- | -- | -0.987 | 6.7 | 28.7 | 1509 | -- | -- |
| 731.33 | 1.26 | 9.23 | -4.41 | -- | -- | -- | -- | -1.27 | -- | -- | -- | -- | -- |
| 1100.02 | 1.55 | 9.08 | -- | 1.66 | -- | -- | -- | -0.812 | 6.81 | -- | -- | -- | -- |
| 1156.12 | 1.58 | 9.15 | -- | -- | 1.27 | -- | -- | -0.953 | -- | 28.8 | 1413 | -- | -- |
| 1244.99 | 1.65 | 9.12 | -- | -- | -- | -- | -- | -0.784 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 285.83 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 2 | 286.44 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 4 | 288.41 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 6 | 288.47 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 9 | 288.51 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 11 | 288.52 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 17 | 290.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 9 |
| 47 | 292.72 | temperature | 20 | 1440 | > th | dose dependent | sin | 1 | NA |
| 52 | 293.29 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 148 | 295.90 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 175 | 296.35 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 185 | 296.47 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 203 | 296.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 206 | 296.71 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 227 | 296.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 264 | 297.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 303 | 297.94 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 305 | 297.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 307 | 297.97 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 390 | 299.11 | radiation | 10 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 430 | 299.57 | temperature | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 764 | 303.81 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 767 | 303.86 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 774 | 303.91 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 811 | 304.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 18 |
| 898 | 305.08 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 922 | 305.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 936 | 305.49 | radiation | 30 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 994 | 306.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 7 |