Os05g0541800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ipomoelin.
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Os05g0541800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ipomoelin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.62 | 0.363 | 9.87 | -1.61 | 0.559 | 0.621 | -0.46 | 5.26 | 0.122 | 22.5 | 1.161 | 8573 | -- | -- |
| 71.55 | 0.394 | 9.75 | -0.862 | 0.478 | 0.491 | -1.08 | -- | 0.32 | 23 | 30 | 30724 | -- | -- |
| 59.62 | 0.36 | 9.87 | -1.63 | 0.608 | 0.393 | -- | 5.04 | 0.136 | 22.3 | 1.992 | 8476 | -- | -- |
| 70.79 | 0.392 | 9.74 | -0.74 | 0.511 | 0.559 | -- | -- | 0.41 | 21.8 | 52.78 | 30729 | -- | -- |
| 78.4 | 0.415 | 9.74 | -0.572 | -- | 0.42 | -- | -0.653 | 0.316 | -- | 1.992 | 8476 | -- | -- |
| 81.31 | 0.423 | 9.76 | -0.623 | 0.52 | -- | -0.691 | -- | 0.3 | 22.4 | -- | -- | -- | -- |
| 83.16 | 0.427 | 9.76 | -0.594 | 0.527 | -- | -- | -- | 0.303 | 22.1 | -- | -- | -- | -- |
| 81.11 | 0.421 | 9.74 | -0.578 | -- | 0.417 | -- | -- | 0.312 | -- | 1.992 | 8476 | -- | -- |
| 85.46 | 0.431 | 9.73 | -- | 0.566 | 0.444 | -- | -- | 0.496 | 21.9 | 52.88 | 25025 | -- | -- |
| 99.98 | 0.467 | 9.74 | -0.587 | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
| 92.45 | 0.45 | 9.74 | -- | 0.525 | -- | -- | -- | 0.369 | 22 | -- | -- | -- | -- |
| 89.93 | 0.443 | 9.73 | -- | -- | 0.42 | -- | -- | 0.377 | -- | 1.992 | 8476 | -- | -- |
| 109.06 | 0.487 | 9.73 | -- | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.41 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 14 |
| 2 | 57.44 | humidity | 50 | 43200 | > th | dose dependent | sin | 8 | NA |
| 105 | 58.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 139 | 58.39 | humidity | 50 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 149 | 58.44 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 155 | 58.46 | humidity | 90 | 43200 | < th | dose dependent | sin | 12 | NA |
| 159 | 58.46 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 13 |
| 163 | 58.48 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 220 | 58.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 241 | 58.71 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 247 | 58.73 | temperature | 30 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 252 | 58.76 | humidity | 90 | 43200 | < th | dose dependent | rect. | 14 | 17 |
| 262 | 58.79 | humidity | 80 | 43200 | > th | dose independent | sin | 5 | NA |
| 273 | 58.81 | temperature | 10 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 291 | 58.86 | temperature | 10 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 293 | 58.86 | temperature | 10 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 333 | 58.93 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 342 | 58.93 | temperature | 30 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 437 | 59.00 | temperature | 30 | 43200 | < th | dose dependent | sin | 22 | NA |
| 466 | 59.01 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 500 | 59.04 | temperature | 10 | 43200 | > th | dose dependent | sin | 22 | NA |
| 535 | 59.06 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 639 | 59.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 640 | 59.12 | humidity | 50 | 43200 | < th | dose dependent | sin | 6 | NA |
| 702 | 59.15 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 743 | 59.17 | temperature | 30 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 765 | 59.18 | temperature | 10 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 931 | 59.25 | humidity | 90 | 43200 | < th | dose dependent | rect. | 21 | 2 |