Os05g0541700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0541700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.83 | 0.318 | 10.4 | -1.02 | 0.831 | -0.614 | -0.661 | 0.554 | 0.037 | 0.366 | 22 | 1030 | -- | -- |
| 46.67 | 0.318 | 10.4 | -0.862 | 0.833 | -0.633 | -0.726 | -- | 0.0542 | 0.315 | 22.1 | 1037 | -- | -- |
| 47.56 | 0.321 | 10.4 | -1.05 | 0.833 | -0.612 | -- | 0.778 | 0.0228 | 0.376 | 22.06 | 1033 | -- | -- |
| 49.23 | 0.327 | 10.4 | -0.832 | 0.832 | -0.649 | -- | -- | 0.072 | 0.404 | 22 | 1028 | -- | -- |
| 88.81 | 0.439 | 10.4 | -1.07 | -- | -0.807 | -- | 0.816 | -0.00478 | -- | 22 | 914 | -- | -- |
| 61.75 | 0.368 | 10.3 | -0.625 | 0.925 | -- | -0.814 | -- | 0.279 | 0.287 | -- | -- | -- | -- |
| 64.61 | 0.376 | 10.3 | -0.594 | 0.928 | -- | -- | -- | 0.283 | 0.321 | -- | -- | -- | -- |
| 90.08 | 0.442 | 10.4 | -0.883 | -- | -0.856 | -- | -- | 0.0318 | -- | 21.8 | 928 | -- | -- |
| 65.29 | 0.376 | 10.3 | -- | 0.844 | -0.432 | -- | -- | 0.216 | 0.335 | 22.37 | 1002 | -- | -- |
| 118.79 | 0.509 | 10.3 | -0.563 | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
| 73.91 | 0.402 | 10.3 | -- | 0.92 | -- | -- | -- | 0.349 | 0.287 | -- | -- | -- | -- |
| 107.25 | 0.482 | 10.3 | -- | -- | -0.675 | -- | -- | 0.129 | -- | 25 | 900 | -- | -- |
| 127.15 | 0.526 | 10.3 | -- | -- | -- | -- | -- | 0.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 2 | 43.25 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 3 | 43.30 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 4 | 43.36 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 9 | 43.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 30 | 43.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 41 | 43.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 116 | 44.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 346 | 45.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 474 | 46.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 551 | 46.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 571 | 46.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 662 | 46.99 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 682 | 47.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 702 | 47.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 782 | 47.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 816 | 47.38 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 944 | 47.57 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 963 | 47.60 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 969 | 47.61 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 7 |
| 970 | 47.61 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 972 | 47.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 983 | 47.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |