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Os05g0541000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.09 (0.0384) R2 : 0.758
β1 : 1.95 (0.141) R2dD : 0.108 R2D : 0.0202
β2 : 2.28 (0.0957) R2dC : 0.335 R2C : 0.464
β3 : 2.48 (0.144) R2dE : 0.172 R2E : 0.285
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.747 (0.082) R2dN8 : 0.0592 R2N8 : 0.0305
σ : 0.717
deviance : 236.81
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C
peak time of C : 12
E
wheather : precipitation
threshold : 0.3324
memory length : 266
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.31
open length of G : 23

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.91 0.697 7.06 2.08 2.26 2.65 -1.03 -2.5 0.75 11.8 0.2907 272 2.29 23
227.72 0.703 7.08 2.03 2.27 2.58 -1.47 -- 0.75 11.9 0.2691 267 2.28 23
224.05 0.697 7.06 2.05 2.27 2.71 -- -3.17 0.759 11.8 0.2969 266 2.32 23
236.81 0.717 7.09 1.95 2.28 2.48 -- -- 0.747 12 0.3324 266 2.31 23
513.07 1.05 7.12 2.09 -- 3.67 -- -2.91 0.691 -- 0.4992 267 2.18 23
327.88 0.849 7.07 1.78 2.97 -- -1.18 -- 0.877 13.3 -- -- -- --
333.55 0.855 7.07 1.73 2.97 -- -- -- 0.87 13.3 -- -- -- --
511.25 1.05 7.18 2.03 -- 3.35 -- -- 0.652 -- 0.4967 292 1.8 22.7
333.11 0.85 7.12 -- 2.23 2.17 -- -- 0.595 11.6 0.9998 263 2.2 23.3
878.84 1.39 7.11 1.62 -- -- -- -- 0.809 -- -- -- -- --
412.85 0.95 7.11 -- 2.94 -- -- -- 0.677 13.3 -- -- -- --
614.16 1.15 7.16 -- -- 3.12 -- -- 0.581 -- 0.497 293 1.78 22.7
947.97 1.44 7.16 -- -- -- -- -- 0.629 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.43 precipitation 0.1 270 < th dose independent rect. 2 23
2 228.43 precipitation 0.1 270 < th dose dependent rect. 2 23
3 235.28 precipitation 0.1 30 < th dose independent rect. 6 19
4 235.28 precipitation 0.1 30 < th dose dependent rect. 6 19
5 236.20 wind 1.0 30 > th dose independent rect. 6 19
6 236.42 radiation 1.0 90 < th dose independent rect. 1 6
9 237.10 radiation 1.0 90 < th dose independent rect. 1 9
17 238.14 radiation 1.0 90 < th dose dependent rect. 1 18
19 238.25 wind 9.0 10 < th dose independent rect. 1 5
20 238.25 temperature 10.0 10 > th dose independent rect. 1 5
22 238.25 temperature 30.0 10 < th dose independent rect. 1 5
23 238.25 humidity 50.0 10 > th dose independent rect. 1 5
26 238.25 atmosphere 995.0 10 > th dose independent rect. 1 5
27 238.25 atmosphere 1010.0 10 < th dose independent rect. 1 5
29 238.25 radiation 20.0 10 < th dose independent rect. 1 5
32 238.25 temperature 10.0 10 > th dose independent rect. 6 19
46 238.39 radiation 1.0 90 < th dose dependent rect. 1 6
48 238.48 radiation 1.0 90 < th dose dependent rect. 1 9
51 238.56 radiation 40.0 30 < th dose dependent rect. 1 5
52 238.60 wind 9.0 1440 < th dose independent rect. 2 5
53 238.60 temperature 10.0 1440 > th dose independent rect. 2 5
56 238.60 temperature 30.0 1440 < th dose independent rect. 2 5
60 238.60 humidity 50.0 1440 > th dose independent rect. 2 5
65 238.60 atmosphere 995.0 1440 > th dose independent rect. 2 5
66 238.60 radiation 40.0 1440 < th dose independent rect. 2 5
70 238.60 temperature 10.0 1440 > th dose independent rect. 7 19
77 238.96 radiation 1.0 90 < th dose independent rect. 1 14
79 239.25 humidity 50.0 10 > th dose dependent rect. 1 5
80 239.31 radiation 40.0 30 < th dose dependent rect. 6 19
83 239.54 radiation 40.0 30 < th dose independent rect. 6 19
88 240.14 wind 9.0 30 < th dose independent rect. 6 19
89 240.15 radiation 1.0 90 < th dose independent rect. 1 18
90 240.16 atmosphere 995.0 10 > th dose independent rect. 6 19
92 240.30 radiation 1.0 90 < th dose dependent rect. 1 14
93 240.34 radiation 1.0 90 < th dose independent rect. 1 16
107 241.22 radiation 1.0 90 < th dose dependent rect. 1 16
109 241.35 precipitation 0.1 30 < th dose independent rect. 1 5
110 241.35 precipitation 0.1 30 < th dose dependent rect. 1 5
119 243.17 wind 1.0 270 > th dose independent rect. 3 21
121 243.29 atmosphere 1015.0 10 < th dose independent rect. 6 19
127 243.92 temperature 10.0 270 > th dose independent rect. 1 1
129 243.92 temperature 30.0 270 < th dose independent rect. 1 1
130 243.92 humidity 50.0 270 > th dose independent rect. 1 1
133 243.92 atmosphere 995.0 270 > th dose independent rect. 1 1
134 243.92 atmosphere 1010.0 270 < th dose independent rect. 1 1
136 243.92 radiation 1.0 270 < th dose independent rect. 1 1
141 243.92 temperature 10.0 270 > th dose independent rect. 2 23
142 243.92 radiation 1.0 270 < th dose dependent rect. 1 1
147 243.93 precipitation 0.1 270 < th dose independent rect. 1 1
148 243.93 precipitation 0.1 270 < th dose dependent rect. 1 1
149 244.08 wind 9.0 270 < th dose independent rect. 1 1
150 244.52 radiation 20.0 30 < th dose independent rect. 6 19
157 245.35 temperature 10.0 30 > th dose dependent rect. 1 5
188 246.68 humidity 50.0 10 > th dose independent rect. 6 19
192 247.29 wind 9.0 30 < th dose dependent rect. 1 5
196 247.47 humidity 50.0 270 > th dose dependent rect. 1 1
231 248.40 radiation 1.0 90 < th dose dependent sin 3 NA
232 248.48 atmosphere 1015.0 270 < th dose dependent rect. 1 2
259 249.12 radiation 1.0 90 < th dose independent sin 4 NA
263 249.32 atmosphere 1015.0 10 < th dose dependent rect. 1 5
276 250.02 atmosphere 995.0 30 > th dose dependent rect. 1 5
301 250.56 temperature 10.0 270 > th dose dependent rect. 1 1
304 250.71 temperature 30.0 90 < th dose dependent rect. 1 4
349 251.92 wind 9.0 270 < th dose independent rect. 3 21
355 252.34 wind 1.0 270 > th dose independent rect. 1 1
370 252.83 wind 9.0 270 < th dose dependent rect. 1 1
380 252.98 radiation 1.0 90 > th dose independent sin 4 NA
390 253.21 temperature 30.0 10 < th dose dependent rect. 1 5
424 253.81 atmosphere 995.0 270 > th dose independent rect. 3 21
447 254.64 atmosphere 995.0 270 > th dose dependent rect. 1 1
565 256.47 temperature 30.0 270 < th dose dependent rect. 1 2
569 256.60 radiation 40.0 10 < th dose dependent rect. 6 6
655 258.14 wind 1.0 270 > th dose independent rect. 24 3
700 258.65 atmosphere 995.0 30 > th dose dependent rect. 6 19
737 259.73 radiation 20.0 10 < th dose independent rect. 6 6
768 260.02 wind 9.0 30 < th dose dependent rect. 6 19
810 260.34 radiation 40.0 270 < th dose dependent rect. 19 14
825 260.57 wind 1.0 270 > th dose independent rect. 19 13
867 261.16 humidity 50.0 10 > th dose dependent rect. 16 14
899 261.44 precipitation 0.1 270 < th dose independent rect. 19 14
900 261.44 precipitation 0.1 270 < th dose dependent rect. 19 14
916 261.59 radiation 30.0 720 < th dose dependent rect. 16 3
930 261.86 radiation 20.0 270 < th dose independent rect. 19 14
989 262.58 atmosphere 1015.0 270 < th dose independent rect. 3 21