Os05g0540800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os05g0540800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.91 | 0.169 | 11.3 | -0.154 | 0.158 | -0.35 | 0.0983 | -0.165 | 0.106 | 18.7 | 0.8054 | 1427 | -- | -- |
| 12.94 | 0.168 | 11.3 | -0.154 | 0.159 | -0.324 | 0.103 | -- | 0.109 | 18.8 | 0.8001 | 1419 | -- | -- |
| 12.92 | 0.167 | 11.3 | -0.155 | 0.159 | -0.358 | -- | -0.184 | 0.108 | 18.9 | 0.77 | 1422 | -- | -- |
| 12.95 | 0.168 | 11.3 | -0.144 | 0.157 | -0.321 | -- | -- | 0.106 | 18.9 | 0.82 | 1419 | -- | -- |
| 14.2 | 0.175 | 11.3 | -0.16 | -- | -0.345 | -- | -0.0595 | 0.105 | -- | 1.1 | 1455 | -- | -- |
| 14.29 | 0.177 | 11.3 | -0.206 | 0.158 | -- | 0.13 | -- | 0.0644 | 18.3 | -- | -- | -- | -- |
| 14.33 | 0.177 | 11.3 | -0.207 | 0.159 | -- | -- | -- | 0.0647 | 18.5 | -- | -- | -- | -- |
| 14.2 | 0.175 | 11.3 | -0.154 | -- | -0.324 | -- | -- | 0.103 | -- | 1.101 | 1455 | -- | -- |
| 13.46 | 0.171 | 11.3 | -- | 0.156 | -0.322 | -- | -- | 0.107 | 18.9 | 0.8103 | 1419 | -- | -- |
| 15.64 | 0.185 | 11.3 | -0.211 | -- | -- | -- | -- | 0.0614 | -- | -- | -- | -- | -- |
| 15.46 | 0.184 | 11.3 | -- | 0.161 | -- | -- | -- | 0.0878 | 18.4 | -- | -- | -- | -- |
| 14.68 | 0.178 | 11.3 | -- | -- | -0.413 | -- | -- | 0.117 | -- | 0.78 | 1450 | -- | -- |
| 16.82 | 0.191 | 11.3 | -- | -- | -- | -- | -- | 0.0849 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 2 | 12.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 8 | 12.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 104 | 12.60 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 131 | 12.62 | radiation | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 165 | 12.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 167 | 12.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 174 | 12.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 175 | 12.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 176 | 12.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 240 | 12.67 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 254 | 12.68 | temperature | 30 | 270 | < th | dose independent | sin | 8 | NA |
| 514 | 12.86 | temperature | 30 | 270 | > th | dose independent | sin | 8 | NA |
| 516 | 12.86 | temperature | 30 | 270 | > th | dose independent | sin | 6 | NA |
| 529 | 12.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 547 | 12.87 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 12 |
| 578 | 12.88 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 12 |
| 598 | 12.88 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 19 |
| 860 | 12.93 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 876 | 12.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 882 | 12.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 903 | 12.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 972 | 12.95 | temperature | 30 | 270 | > th | dose dependent | sin | 9 | NA |
| 979 | 12.96 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 1 |
| 980 | 12.96 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 991 | 12.96 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 7 |
| 992 | 12.96 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |