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Os05g0539400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 35 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0181) R2 : 0.353
β1 : -0.955 (0.0665) R2dD : 0.304 R2D : 0.328
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.142 (0.0388) R2dN8 : 0.0256 R2N8 : 0.0493
σ : 0.341
deviance : 53.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.6 0.276 11 -1.12 0.495 -0.545 0.0667 0.309 0.0693 22.6 21.98 329 -- --
34.68 0.274 11 -1.1 0.494 -0.618 0.0358 -- 0.0718 22.6 21.76 322 -- --
34.62 0.274 11 -1.12 0.494 -0.547 -- 0.312 0.0695 22.6 21.95 328 -- --
34.68 0.274 11 -1.1 0.493 -0.655 -- -- 0.0757 22.6 21.51 330 -- --
47.61 0.321 11 -1.17 -- -0.553 -- 0.296 0.00421 -- 26.1 673 -- --
38.14 0.29 10.9 -0.961 0.497 -- 0.0538 -- 0.141 22.3 -- -- -- --
38.16 0.289 10.9 -0.963 0.496 -- -- -- 0.141 22.3 -- -- -- --
47.72 0.322 11 -1.12 -- -0.573 -- -- 0.0166 -- 25.81 686 -- --
62.05 0.367 10.9 -- 0.469 0.202 -- -- 0.277 21.8 34.33 11 -- --
53.16 0.341 10.9 -0.955 -- -- -- -- 0.142 -- -- -- -- --
62.6 0.37 10.9 -- 0.492 -- -- -- 0.248 22.1 -- -- -- --
74.15 0.401 10.9 -- -- 0.448 -- -- 0.299 -- 42.33 3 -- --
77.24 0.41 10.9 -- -- -- -- -- 0.248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.68 temperature 10.0 270 > th dose dependent rect. 23 14
3 32.06 temperature 20.0 270 > th dose independent rect. 23 15
4 32.16 temperature 30.0 270 < th dose dependent rect. 3 8
11 32.34 temperature 20.0 270 > th dose independent rect. 8 7
13 32.35 humidity 90.0 270 < th dose independent rect. 8 7
16 32.46 humidity 90.0 270 < th dose independent rect. 9 5
28 32.62 temperature 10.0 270 > th dose dependent rect. 8 6
43 32.77 temperature 15.0 270 > th dose independent rect. 9 18
46 32.84 atmosphere 1010.0 270 < th dose independent rect. 9 5
61 32.96 atmosphere 1010.0 270 < th dose independent rect. 8 19
78 33.07 atmosphere 1010.0 90 < th dose independent rect. 10 19
119 33.27 temperature 15.0 10 > th dose dependent rect. 24 15
136 33.36 wind 7.0 270 < th dose independent rect. 14 19
141 33.37 temperature 30.0 270 < th dose dependent sin 6 NA
149 33.41 wind 7.0 270 < th dose independent rect. 15 17
159 33.46 atmosphere 1010.0 10 < th dose independent rect. 10 6
172 33.50 humidity 90.0 270 < th dose independent rect. 11 1
267 33.73 humidity 90.0 10 < th dose independent rect. 10 6
278 33.76 temperature 20.0 10 > th dose independent rect. 10 20
292 33.79 wind 7.0 270 < th dose independent rect. 9 5
298 33.80 humidity 90.0 10 < th dose independent rect. 10 8
320 33.83 temperature 15.0 10 > th dose dependent rect. 11 4
323 33.84 atmosphere 1010.0 270 < th dose independent rect. 11 1
352 33.87 temperature 25.0 270 < th dose dependent rect. 23 13
360 33.90 radiation 1.0 270 > th dose independent rect. 8 7
361 33.90 radiation 20.0 4320 < th dose independent rect. 20 10
375 33.92 temperature 10.0 270 > th dose dependent rect. 8 19
386 33.93 temperature 10.0 90 > th dose dependent rect. 10 19
400 33.96 precipitation 0.1 270 < th dose independent rect. 3 6
408 33.96 precipitation 0.1 270 < th dose dependent rect. 3 6
416 33.98 humidity 50.0 270 > th dose independent rect. 9 18
433 34.00 wind 7.0 270 < th dose independent rect. 3 6
434 34.00 humidity 60.0 270 > th dose independent rect. 3 6
436 34.00 radiation 1.0 270 < th dose independent rect. 11 17
440 34.01 temperature 10.0 270 > th dose independent rect. 3 6
443 34.01 atmosphere 995.0 270 > th dose independent rect. 3 6
444 34.01 atmosphere 1015.0 270 < th dose independent rect. 3 6
475 34.04 temperature 20.0 270 < th dose independent sin 6 NA
476 34.04 temperature 30.0 270 < th dose independent rect. 3 6
479 34.05 temperature 10.0 10 > th dose dependent rect. 10 19
485 34.06 atmosphere 1015.0 270 < th dose dependent rect. 9 4
491 34.07 humidity 80.0 270 > th dose independent rect. 3 8
493 34.07 radiation 1.0 4320 < th dose dependent rect. 14 3
509 34.09 wind 9.0 270 < th dose independent rect. 9 18
527 34.11 precipitation 0.1 270 < th dose independent rect. 9 18
537 34.11 precipitation 0.1 270 < th dose dependent rect. 9 18
570 34.17 temperature 20.0 270 < th dose independent rect. 3 8
583 34.17 radiation 1.0 270 < th dose dependent rect. 11 17
587 34.18 temperature 30.0 270 < th dose independent rect. 9 18
615 34.20 atmosphere 1015.0 270 < th dose dependent rect. 8 6
629 34.21 wind 9.0 270 < th dose dependent rect. 3 6
630 34.21 humidity 50.0 270 > th dose dependent rect. 3 7
637 34.22 precipitation 0.1 270 < th dose independent rect. 15 17
639 34.22 humidity 50.0 270 > th dose independent rect. 8 20
645 34.22 precipitation 0.1 270 < th dose dependent rect. 15 17
650 34.23 atmosphere 995.0 270 > th dose independent rect. 9 18
657 34.23 radiation 1.0 4320 < th dose dependent rect. 7 10
695 34.26 radiation 20.0 270 < th dose dependent rect. 12 15
702 34.27 wind 7.0 270 < th dose independent rect. 13 10
717 34.28 wind 7.0 270 < th dose independent rect. 11 1
729 34.29 wind 1.0 270 > th dose independent rect. 8 7
730 34.29 precipitation 0.1 270 < th dose independent rect. 8 7
740 34.29 radiation 1.0 4320 < th dose dependent rect. 10 7
741 34.29 precipitation 0.1 270 < th dose dependent rect. 8 7
775 34.31 radiation 1.0 270 > th dose independent rect. 15 17
783 34.32 radiation 1.0 270 < th dose independent sin 12 NA
799 34.33 atmosphere 995.0 270 > th dose independent rect. 8 7
826 34.34 atmosphere 995.0 270 > th dose independent rect. 15 17
828 34.34 radiation 1.0 90 < th dose independent rect. 19 23
829 34.34 radiation 20.0 10 < th dose dependent sin 10 NA
846 34.35 humidity 50.0 270 > th dose independent rect. 8 7
867 34.36 temperature 20.0 270 < th dose independent rect. 23 12
868 34.36 temperature 15.0 1440 > th dose independent rect. 6 14
870 34.36 temperature 10.0 270 > th dose independent rect. 15 17
880 34.37 radiation 40.0 270 < th dose independent rect. 3 5
881 34.37 temperature 30.0 270 < th dose independent rect. 9 6
897 34.38 precipitation 0.1 270 < th dose independent rect. 9 5
910 34.38 precipitation 0.1 270 < th dose dependent rect. 9 5
933 34.40 humidity 60.0 270 > th dose independent rect. 9 5
949 34.41 wind 1.0 270 > th dose independent rect. 9 5
992 34.43 radiation 40.0 270 < th dose independent rect. 15 17