Os05g0537400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein phosphatase 2C.
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Os05g0537400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein phosphatase 2C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.91 | 0.304 | 11.7 | 0.134 | 1.98 | 2.54 | 1.49 | 1.06 | -0.0804 | 5.22 | 1.013 | 722 | -- | -- |
| 42.71 | 0.304 | 11.7 | 0.16 | 2.11 | 2.61 | 1.02 | -- | -0.107 | 5.1 | 1.01 | 698 | -- | -- |
| 44.76 | 0.312 | 11.7 | 0.226 | 1.89 | 2.39 | -- | 0.286 | -0.017 | 5.18 | 1.01 | 721 | -- | -- |
| 43.28 | 0.306 | 11.7 | 0.109 | 1.81 | 2.34 | -- | -- | -0.0919 | 5.22 | 1.015 | 726 | -- | -- |
| 55.18 | 0.346 | 11.8 | 0.391 | -- | 0.208 | -- | 1.06 | -0.0508 | -- | 9.82 | 15520 | -- | -- |
| 53.86 | 0.344 | 11.7 | 0.269 | 0.244 | -- | 0.262 | -- | 0.000689 | 23.4 | -- | -- | -- | -- |
| 54.14 | 0.345 | 11.7 | 0.259 | 0.245 | -- | -- | -- | 0.000169 | 23.1 | -- | -- | -- | -- |
| 49.45 | 0.328 | 11.7 | 0.243 | -- | 0.497 | -- | -- | -0.0304 | -- | 10.18 | 1211 | -- | -- |
| 43.58 | 0.307 | 11.7 | -- | 1.89 | 2.44 | -- | -- | -0.103 | 5.24 | 1.01 | 726 | -- | -- |
| 57.87 | 0.355 | 11.7 | 0.265 | -- | -- | -- | -- | 0.00213 | -- | -- | -- | -- | -- |
| 55.91 | 0.35 | 11.7 | -- | 0.247 | -- | -- | -- | -0.0287 | 23.1 | -- | -- | -- | -- |
| 49.7 | 0.328 | 11.7 | -- | -- | 0.49 | -- | -- | -0.062 | -- | 10.3 | 1203 | -- | -- |
| 59.71 | 0.361 | 11.7 | -- | -- | -- | -- | -- | -0.0272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.07 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 2 | 41.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 7 | 41.65 | radiation | 1 | 720 | > th | dose independent | sin | 23 | NA |
| 12 | 41.93 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 13 | 41.93 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 15 |
| 69 | 41.97 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 72 | 42.02 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 77 | 42.07 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 23 |
| 80 | 42.12 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 23 |
| 81 | 42.13 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 82 | 42.13 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 83 | 42.13 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 88 | 42.16 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 93 | 42.20 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 23 |
| 99 | 42.26 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 14 |
| 101 | 42.27 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 108 | 42.31 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 111 | 42.33 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 23 |
| 117 | 42.35 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 16 |
| 128 | 42.38 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 159 | 42.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 160 | 42.50 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 170 | 42.50 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 16 |
| 185 | 42.55 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 214 | 42.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 219 | 42.63 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 227 | 42.66 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 237 | 42.70 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 245 | 42.73 | humidity | 80 | 720 | > th | dose independent | rect. | 2 | 19 |
| 263 | 42.78 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 20 |
| 264 | 42.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 268 | 42.80 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 272 | 42.81 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 285 | 42.86 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 294 | 42.88 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 299 | 42.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 316 | 42.95 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 322 | 42.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 324 | 42.98 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 20 |
| 325 | 42.98 | humidity | 80 | 720 | > th | dose dependent | rect. | 8 | 14 |
| 328 | 42.99 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 338 | 43.01 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 20 |
| 342 | 43.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 349 | 43.05 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 18 |
| 440 | 43.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 454 | 43.28 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 458 | 43.30 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 475 | 43.34 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 489 | 43.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 493 | 43.39 | humidity | 60 | 720 | > th | dose dependent | no | NA | NA |
| 497 | 43.40 | humidity | 80 | 720 | > th | dose dependent | sin | 21 | NA |
| 507 | 43.43 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 7 |
| 515 | 43.45 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 529 | 43.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 555 | 43.52 | humidity | 60 | 720 | > th | dose dependent | sin | 17 | NA |
| 619 | 43.61 | humidity | 80 | 720 | > th | dose independent | rect. | 9 | 12 |
| 634 | 43.63 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 14 |
| 715 | 43.74 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 781 | 43.83 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 784 | 43.83 | humidity | 90 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 792 | 43.84 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 806 | 43.86 | humidity | 80 | 720 | < th | dose independent | rect. | 5 | 16 |
| 858 | 43.91 | humidity | 90 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 982 | 44.07 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 5 |