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Os05g0536000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.27 (0.0302) R2 : 0.668
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.34 (0.08) R2dC : 0.662 R2C : 0.512
β3 : -1.75 (0.123) R2dE : 0.155 R2E : 0.0042
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0373 (0.0637) R2dN8 : 0.000317 R2N8 : -0.00278
σ : 0.567
deviance : 148.25
__
_____
C
peak time of C : 19.6
E
wheather : humidity
threshold : 50.97
memory length : 257
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.02
open length of G : 21.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.98 0.564 9.29 -0.115 2.33 -2.11 0.191 2.45 -0.0305 19.6 50.38 248 3.07 22.1
147.51 0.566 9.28 0.0232 2.32 -1.75 0.575 -- -0.0214 19.6 51 254 3.03 21.7
143.54 0.558 9.29 -0.143 2.3 -2.28 -- 3.26 -0.032 19.6 51 242 3.03 22.3
148.29 0.567 9.27 0.00472 2.34 -1.79 -- -- -0.0248 19.6 51 256 3 21.7
345.15 0.865 9.23 -0.281 -- -2.72 -- 3.72 0.0293 -- 52.81 452 1.41 24
199.58 0.662 9.28 0.203 2.1 -- 0.616 -- -0.0913 20.4 -- -- -- --
200.76 0.664 9.28 0.184 2.09 -- -- -- -0.0913 20.4 -- -- -- --
283.6 0.784 9.21 0.0262 -- -2 -- -- -0.0106 -- 77 719 0.675 24
148.25 0.567 9.27 -- 2.34 -1.75 -- -- -0.0373 19.6 50.97 257 3.02 21.7
444.59 0.985 9.23 0.172 -- -- -- -- -0.113 -- -- -- -- --
201.65 0.664 9.29 -- 2.09 -- -- -- -0.112 20.4 -- -- -- --
281.33 0.781 9.24 -- -- -2.09 -- -- -0.174 -- 76 723 1.8 24
445.37 0.985 9.23 -- -- -- -- -- -0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.30 temperature 10.0 90 > th dose dependent rect. 5 10
2 145.43 humidity 50.0 270 > th dose independent rect. 3 22
3 146.73 humidity 50.0 270 > th dose independent rect. 5 19
4 147.55 radiation 1.0 270 < th dose dependent rect. 17 7
6 147.72 humidity 70.0 270 > th dose independent rect. 18 6
8 147.80 radiation 1.0 270 < th dose independent rect. 16 8
10 148.03 temperature 30.0 270 < th dose independent rect. 17 7
24 149.90 temperature 10.0 90 > th dose dependent rect. 15 14
25 149.94 wind 7.0 270 < th dose independent rect. 14 15
29 150.32 humidity 50.0 270 > th dose dependent rect. 17 7
31 150.43 humidity 50.0 270 > th dose independent rect. 10 14
33 150.65 humidity 70.0 270 > th dose independent rect. 19 4
34 150.65 radiation 20.0 14400 < th dose dependent rect. 22 5
35 150.67 wind 9.0 270 < th dose independent rect. 22 23
40 151.01 wind 9.0 270 < th dose independent rect. 23 20
44 151.08 precipitation 0.1 270 < th dose independent rect. 24 19
45 151.08 precipitation 0.1 270 < th dose dependent rect. 24 19
68 151.82 precipitation 0.1 10 < th dose independent rect. 2 19
69 151.82 precipitation 0.1 10 < th dose dependent rect. 2 19
78 152.09 atmosphere 995.0 270 > th dose independent rect. 24 19
83 152.22 wind 1.0 270 > th dose independent rect. 24 19
90 152.35 radiation 10.0 10 < th dose dependent rect. 2 19
91 152.36 temperature 10.0 270 > th dose independent rect. 19 5
94 152.36 atmosphere 995.0 270 > th dose independent rect. 19 5
100 152.36 temperature 10.0 270 > th dose independent rect. 24 19
101 152.36 atmosphere 1015.0 270 < th dose independent rect. 24 19
133 152.63 wind 9.0 270 < th dose independent rect. 19 5
135 152.65 wind 9.0 10 < th dose independent rect. 2 19
141 152.83 wind 1.0 270 > th dose independent rect. 19 4
167 153.24 atmosphere 995.0 270 > th dose dependent rect. 24 5
171 153.29 temperature 10.0 10 > th dose independent rect. 21 5
172 153.29 temperature 30.0 10 < th dose independent rect. 21 5
173 153.29 humidity 50.0 10 > th dose independent rect. 21 5
176 153.29 atmosphere 995.0 10 > th dose independent rect. 21 5
177 153.29 radiation 1.0 10 < th dose independent rect. 21 5
182 153.29 temperature 10.0 10 > th dose independent rect. 2 19
184 153.29 atmosphere 1015.0 10 < th dose independent rect. 2 19
185 153.29 radiation 1.0 10 < th dose dependent rect. 21 5
192 153.34 temperature 10.0 270 > th dose independent rect. 21 1
193 153.34 temperature 30.0 270 < th dose independent rect. 21 1
194 153.34 humidity 50.0 270 > th dose independent rect. 21 1
197 153.34 atmosphere 995.0 270 > th dose independent rect. 21 1
198 153.34 radiation 1.0 270 < th dose independent rect. 21 1
203 153.34 temperature 10.0 270 > th dose independent rect. 22 23
204 153.34 radiation 1.0 270 < th dose dependent rect. 21 1
214 153.45 wind 9.0 10 < th dose independent rect. 21 5
216 153.47 wind 1.0 270 > th dose independent rect. 21 1
220 153.55 humidity 50.0 10 > th dose dependent rect. 21 5
221 153.60 precipitation 0.1 270 < th dose independent rect. 14 15
222 153.60 precipitation 0.1 270 < th dose dependent rect. 14 15
229 153.91 wind 9.0 270 < th dose independent rect. 21 1
233 153.94 atmosphere 995.0 10 > th dose independent rect. 2 19
234 153.95 temperature 10.0 270 > th dose dependent rect. 13 6
280 154.16 precipitation 0.1 270 < th dose independent rect. 21 1
281 154.16 temperature 15.0 270 > th dose independent rect. 5 9
282 154.16 precipitation 0.1 270 < th dose dependent rect. 21 1
284 154.18 temperature 10.0 10 > th dose dependent rect. 6 9
286 154.20 humidity 50.0 270 > th dose dependent rect. 19 4
287 154.23 precipitation 0.1 10 < th dose independent rect. 21 5
288 154.23 precipitation 0.1 10 < th dose dependent rect. 21 5
301 154.37 precipitation 0.1 270 < th dose independent rect. 19 5
302 154.37 precipitation 0.1 270 < th dose dependent rect. 19 5
316 154.56 temperature 10.0 1440 > th dose independent rect. 22 5
319 154.56 temperature 30.0 1440 < th dose independent rect. 22 5
323 154.56 humidity 50.0 1440 > th dose independent rect. 22 5
331 154.56 atmosphere 995.0 1440 > th dose independent rect. 22 5
332 154.56 radiation 1.0 1440 < th dose independent rect. 22 5
352 154.56 temperature 10.0 1440 > th dose independent rect. 3 19
357 154.56 radiation 1.0 1440 < th dose dependent rect. 22 5
395 154.73 radiation 20.0 10 < th dose dependent rect. 24 21
431 155.15 atmosphere 1000.0 270 > th dose dependent rect. 1 2
434 155.25 temperature 10.0 90 > th dose dependent rect. 15 6
460 155.64 precipitation 0.1 270 < th dose independent rect. 5 9
461 155.64 precipitation 0.1 270 < th dose dependent rect. 5 9
507 155.73 wind 1.0 270 > th dose independent rect. 13 6
509 155.77 temperature 30.0 270 < th dose independent rect. 5 19
518 155.82 atmosphere 995.0 270 > th dose independent rect. 5 9
519 155.82 atmosphere 1015.0 270 < th dose independent rect. 5 9
520 155.82 temperature 10.0 270 > th dose independent rect. 14 15
523 155.85 humidity 50.0 270 > th dose dependent rect. 21 1
524 155.87 wind 7.0 270 < th dose independent rect. 13 6
531 155.97 radiation 1.0 270 < th dose dependent rect. 24 16
544 156.18 wind 9.0 270 < th dose independent rect. 5 9
556 156.28 radiation 1.0 270 < th dose dependent sin 17 NA
670 157.05 radiation 1.0 270 > th dose independent sin 16 NA
671 157.05 radiation 1.0 270 < th dose independent sin 16 NA
673 157.07 radiation 20.0 14400 < th dose dependent rect. 22 3
681 157.13 temperature 15.0 270 > th dose dependent rect. 15 3
693 157.25 humidity 90.0 270 < th dose independent rect. 13 6
694 157.25 atmosphere 995.0 270 > th dose independent rect. 14 15
834 157.72 radiation 1.0 90 > th dose independent rect. 4 11
844 157.73 atmosphere 1015.0 270 < th dose independent rect. 19 4
845 157.73 radiation 40.0 90 < th dose independent rect. 15 14
871 157.86 precipitation 0.1 270 < th dose independent rect. 13 6
872 157.86 precipitation 0.1 270 < th dose dependent rect. 13 6
887 158.03 radiation 1.0 270 < th dose independent rect. 24 16
891 158.06 atmosphere 995.0 270 > th dose independent rect. 13 6
928 158.25 wind 5.0 270 < th dose independent rect. 24 5
929 158.25 atmosphere 1000.0 270 > th dose independent rect. 24 5
931 158.26 temperature 15.0 270 > th dose independent rect. 19 18
934 158.30 wind 7.0 30 < th dose independent rect. 15 6
964 158.37 atmosphere 1000.0 10 > th dose dependent rect. 2 4
975 158.44 temperature 10.0 270 > th dose independent rect. 13 6
977 158.44 atmosphere 1010.0 270 < th dose independent rect. 13 6
980 158.44 atmosphere 995.0 270 > th dose independent rect. 19 18