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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0534900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.22 (0.0352) R2 : 0.232
β1 : 0.821 (0.129) R2dD : 0.0709 R2D : 0.0567
β2 : 0.897 (0.0894) R2dC : 0.17 R2C : 0.161
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.145 (0.0752) R2dN8 : 0.00844 R2N8 : -0.00357
σ : 0.662
deviance : 199.73
__
_____
C
peak time of C : 15.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
192.51 0.652 4.19 1.22 0.968 -0.8 0.711 5.16 0.132 15.8 30.16 10 -- --
195.84 0.652 4.21 0.979 0.888 -0.265 0.603 -- 0.168 15.7 29.8 10 -- --
193.96 0.649 4.18 1.25 0.965 -0.801 -- 5.51 0.139 15.8 30.13 10 -- --
196.93 0.654 4.22 0.894 0.95 -0.263 -- -- 0.118 15.7 29.7 10 -- --
239.7 0.721 4.17 1.21 -- -0.404 -- 5.86 0.149 -- 30.3 13 -- --
198.3 0.66 4.22 0.812 0.892 -- 0.699 -- 0.141 15.9 -- -- -- --
199.73 0.662 4.22 0.821 0.897 -- -- -- 0.145 15.9 -- -- -- --
225.73 0.7 4.26 0.649 -- 0.452 -- -- -0.0558 -- 25.73 62 -- --
215.99 0.684 4.24 -- 0.929 -0.209 -- -- 0.0501 15.8 29.8 9 -- --
243.78 0.73 4.22 0.784 -- -- -- -- 0.121 -- -- -- -- --
217.49 0.69 4.24 -- 0.881 -- -- -- 0.0538 15.9 -- -- -- --
236.98 0.717 4.27 -- -- 0.508 -- -- -0.143 -- 25.7 66 -- --
260 0.753 4.23 -- -- -- -- -- 0.0343 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.07 temperature 30.0 10 < th dose independent rect. 8 18
2 187.17 temperature 30.0 30 < th dose dependent rect. 2 6
4 187.30 temperature 25.0 10 < th dose dependent rect. 10 1
6 187.36 wind 3.0 90 > th dose independent rect. 21 12
9 187.54 wind 3.0 90 < th dose independent rect. 19 14
10 187.57 temperature 15.0 30 > th dose independent rect. 8 18
11 187.58 wind 3.0 270 > th dose independent rect. 21 5
12 187.68 temperature 25.0 90 < th dose independent rect. 2 6
19 187.97 wind 3.0 90 < th dose independent rect. 21 12
31 188.36 temperature 15.0 720 < th dose independent rect. 11 14
32 188.37 temperature 15.0 720 < th dose dependent rect. 11 14
33 188.38 temperature 15.0 720 < th dose independent rect. 23 2
48 188.50 temperature 15.0 720 < th dose dependent rect. 23 2
62 188.53 wind 3.0 90 < th dose independent rect. 23 10
87 188.70 temperature 25.0 270 < th dose dependent rect. 3 2
103 188.78 wind 3.0 10 > th dose independent rect. 24 2
120 189.15 temperature 20.0 90 < th dose independent rect. 8 3
128 189.35 temperature 30.0 10 < th dose independent rect. 8 23
134 189.46 humidity 90.0 10 < th dose independent rect. 8 19
136 189.53 temperature 20.0 270 > th dose independent rect. 21 6
143 189.63 temperature 20.0 270 < th dose independent rect. 3 2
146 189.63 atmosphere 995.0 30 > th dose dependent rect. 2 6
173 189.95 temperature 15.0 10 > th dose independent rect. 22 4
181 189.98 temperature 20.0 270 < th dose dependent rect. 23 6
184 190.00 humidity 90.0 30 < th dose independent rect. 21 6
185 190.00 atmosphere 1000.0 30 > th dose independent rect. 2 6
194 190.09 temperature 20.0 270 < th dose dependent rect. 6 2
196 190.10 wind 9.0 4320 < th dose independent rect. 3 6
198 190.11 wind 5.0 90 < th dose dependent rect. 18 15
228 190.30 humidity 80.0 270 < th dose dependent rect. 22 3
231 190.31 atmosphere 1010.0 30 > th dose dependent rect. 24 11
247 190.38 wind 3.0 10 < th dose dependent rect. 6 3
248 190.38 wind 1.0 270 > th dose dependent rect. 21 5
255 190.43 atmosphere 1010.0 10 > th dose dependent rect. 10 1
275 190.45 wind 3.0 270 > th dose independent rect. 9 10
286 190.45 wind 9.0 30 < th dose dependent rect. 2 6
300 190.47 temperature 20.0 270 < th dose independent rect. 23 7
317 190.54 wind 5.0 30 < th dose independent rect. 2 6
318 190.54 wind 3.0 10 > th dose independent rect. 22 9
322 190.56 temperature 10.0 1440 > th dose independent rect. 3 6
325 190.56 humidity 50.0 1440 > th dose independent rect. 3 6
327 190.56 atmosphere 995.0 1440 > th dose independent rect. 3 6
328 190.56 temperature 10.0 1440 > th dose independent rect. 9 18
336 190.58 precipitation 0.1 30 < th dose independent rect. 2 6
339 190.58 precipitation 0.1 30 < th dose dependent rect. 2 6
340 190.60 precipitation 0.1 30 < th dose independent rect. 8 18
341 190.60 precipitation 0.1 30 < th dose dependent rect. 8 18
365 190.69 wind 3.0 10 > th dose independent rect. 22 5
373 190.71 temperature 20.0 10 < th dose independent rect. 8 2
387 190.72 temperature 10.0 30 > th dose independent rect. 2 6
390 190.72 humidity 50.0 30 > th dose independent rect. 2 6
393 190.72 atmosphere 1015.0 30 < th dose independent rect. 2 6
400 190.73 wind 9.0 30 < th dose dependent rect. 8 18
401 190.74 wind 5.0 90 < th dose dependent rect. 23 9
408 190.76 temperature 15.0 720 < th dose dependent sin 17 NA
409 190.76 wind 1.0 10 > th dose dependent rect. 22 5
411 190.78 temperature 15.0 270 > th dose independent rect. 21 2
423 190.83 wind 1.0 10 > th dose independent rect. 8 19
425 190.84 wind 5.0 30 < th dose independent rect. 8 18
428 190.85 wind 9.0 30 < th dose independent rect. 8 18
430 190.87 humidity 80.0 270 < th dose independent rect. 22 3
464 190.96 temperature 30.0 10 < th dose independent rect. 6 20
467 190.97 radiation 40.0 30 < th dose independent rect. 2 6
475 191.01 atmosphere 995.0 30 > th dose independent rect. 8 18
479 191.02 temperature 15.0 270 > th dose independent rect. 5 21
509 191.08 wind 3.0 90 < th dose independent sin 9 NA
524 191.14 wind 1.0 90 > th dose dependent rect. 23 3
530 191.16 wind 3.0 90 > th dose independent sin 9 NA
534 191.17 temperature 20.0 10 > th dose independent rect. 1 1
536 191.17 temperature 15.0 90 > th dose independent rect. 21 14
540 191.18 humidity 50.0 30 > th dose dependent rect. 2 6
548 191.20 humidity 50.0 30 > th dose independent rect. 8 18
558 191.24 atmosphere 1010.0 270 < th dose independent rect. 24 11
578 191.29 humidity 90.0 10 < th dose independent rect. 6 21
581 191.30 atmosphere 1010.0 720 < th dose independent rect. 2 1
582 191.30 temperature 15.0 30 > th dose independent rect. 8 23
584 191.30 atmosphere 1010.0 10 < th dose dependent rect. 22 4
615 191.39 humidity 90.0 30 < th dose independent rect. 21 19
648 191.45 wind 1.0 10 > th dose independent rect. 8 23
660 191.48 temperature 15.0 90 > th dose independent rect. 8 21
661 191.48 temperature 10.0 720 > th dose dependent rect. 2 1
684 191.52 temperature 10.0 90 > th dose dependent rect. 9 20
694 191.54 wind 3.0 90 > th dose independent rect. 11 10
704 191.56 wind 1.0 10 < th dose independent rect. 6 3
717 191.57 temperature 30.0 90 > th dose dependent rect. 17 20
727 191.59 temperature 30.0 30 < th dose dependent rect. 8 18
740 191.63 temperature 30.0 90 > th dose dependent sin 9 NA
749 191.65 humidity 80.0 30 > th dose independent rect. 2 13
763 191.67 humidity 90.0 10 < th dose independent rect. 21 15
769 191.69 atmosphere 1010.0 270 > th dose independent rect. 5 3
788 191.69 wind 1.0 10 > th dose dependent rect. 22 9
792 191.71 temperature 20.0 270 > th dose independent rect. 1 1
799 191.72 humidity 80.0 30 > th dose independent rect. 2 9
808 191.73 radiation 40.0 30 < th dose dependent rect. 2 6
814 191.74 wind 1.0 90 > th dose dependent rect. 21 9
820 191.76 atmosphere 1010.0 30 < th dose independent rect. 22 4
822 191.76 humidity 90.0 10 < th dose independent rect. 21 21
824 191.76 humidity 80.0 10 > th dose dependent rect. 2 13
828 191.77 humidity 90.0 30 < th dose independent rect. 8 23
854 191.84 wind 3.0 10 < th dose independent rect. 19 14
862 191.85 temperature 10.0 30 > th dose dependent rect. 22 4
869 191.87 radiation 1.0 4320 < th dose dependent rect. 23 4
887 191.90 atmosphere 1000.0 30 > th dose independent rect. 2 19
889 191.90 wind 1.0 90 > th dose dependent rect. 21 12
916 191.95 wind 3.0 90 > th dose independent rect. 8 1
919 191.95 radiation 1.0 270 < th dose dependent sin 3 NA
953 191.98 humidity 50.0 10 > th dose dependent rect. 2 12
957 191.99 humidity 90.0 10 < th dose independent rect. 6 23
961 192.00 wind 7.0 720 < th dose independent rect. 15 6
965 192.00 temperature 30.0 30 < th dose independent rect. 3 23
970 192.01 humidity 90.0 43200 < th dose independent rect. 14 1
999 192.04 radiation 30.0 90 < th dose independent rect. 2 19