Os05g0533400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0533400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 203.79 | 0.671 | 6.29 | 1.46 | 1.27 | -4.22 | 0.0106 | -2.57 | 0.204 | 21.4 | 23.78 | 4957 | -- | -- |
| 209.43 | 0.674 | 6.33 | 1.41 | 1.23 | -3.39 | 0.0243 | -- | 0.245 | 21.4 | 25.62 | 4899 | -- | -- |
| 203.46 | 0.664 | 6.28 | 1.5 | 1.29 | -4.3 | -- | -2.91 | 0.232 | 21.4 | 23.49 | 4976 | -- | -- |
| 209.15 | 0.674 | 6.36 | 1.38 | 1.23 | -3.48 | -- | -- | 0.212 | 21.4 | 25.43 | 4912 | -- | -- |
| 289.43 | 0.792 | 6.36 | 1.39 | -- | -3.85 | -- | -0.897 | 0.12 | -- | 26.54 | 3703 | -- | -- |
| 400.11 | 0.938 | 6.17 | 3.02 | 1.35 | -- | 0.144 | -- | 1.06 | 21.6 | -- | -- | -- | -- |
| 400.18 | 0.937 | 6.17 | 3.01 | 1.35 | -- | -- | -- | 1.06 | 21.6 | -- | -- | -- | -- |
| 263.76 | 0.756 | 6.31 | 1.97 | -- | -3.81 | -- | -- | 0.288 | -- | 29.55 | 785 | -- | -- |
| 232.62 | 0.71 | 6.46 | -- | 1.31 | -3.25 | -- | -- | -0.249 | 21.4 | 59.37 | 47520 | -- | -- |
| 508.44 | 1.05 | 6.13 | 3.02 | -- | -- | -- | -- | 1.05 | -- | -- | -- | -- | -- |
| 639.22 | 1.18 | 6.24 | -- | 1.36 | -- | -- | -- | 0.72 | 21.8 | -- | -- | -- | -- |
| 322.18 | 0.836 | 6.4 | -- | -- | -4.47 | -- | -- | -0.142 | -- | 25.24 | 5148 | -- | -- |
| 749.43 | 1.28 | 6.21 | -- | -- | -- | -- | -- | 0.717 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.57 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 60 | 191.05 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 70 | 191.11 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 71 | 191.11 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 1 | NA |
| 84 | 191.20 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 237 | 192.06 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 239 | 192.06 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 250 | 192.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 252 | 192.09 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 253 | 192.09 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 255 | 192.10 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 384 | 192.67 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 402 | 192.73 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 408 | 192.76 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 419 | 192.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 427 | 192.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 428 | 192.86 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 431 | 192.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 442 | 192.90 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 464 | 192.96 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 502 | 193.02 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 515 | 193.03 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 521 | 193.05 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 540 | 193.14 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 541 | 193.15 | radiation | 1 | 14400 | > th | dose independent | sin | 4 | NA |
| 550 | 193.19 | radiation | 1 | 14400 | < th | dose independent | sin | 5 | NA |
| 586 | 193.34 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 602 | 193.38 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 609 | 193.41 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 613 | 193.44 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 628 | 193.51 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 643 | 193.55 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 651 | 193.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 660 | 193.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 661 | 193.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 678 | 193.66 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 679 | 193.66 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 692 | 193.69 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 693 | 193.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 719 | 193.73 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 1 | NA |
| 749 | 193.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 751 | 193.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 767 | 193.84 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 782 | 193.89 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 824 | 194.07 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 2 | NA |