Os05g0532500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0532500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.72 | 0.476 | 2.61 | 3.25 | 0.411 | 27.7 | -0.428 | -169 | -0.107 | 1.26 | 1 | 7 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 112.29 | 0.497 | 3.19 | -0.127 | 0.429 | -- | -0.386 | -- | -0.122 | 1.61 | -- | -- | -- | -- |
| 112.89 | 0.498 | 3.18 | -0.114 | 0.43 | -- | -- | -- | -0.12 | 1.68 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 124.14 | 0.521 | 3.18 | -0.0969 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 113.23 | 0.498 | 3.18 | -- | 0.428 | -- | -- | -- | -0.108 | 1.67 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 124.38 | 0.521 | 3.18 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.29 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 8 | 95.29 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 27 | 97.33 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 17 |
| 37 | 97.52 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 13 |
| 109 | 97.84 | temperature | 20 | 90 | < th | dose dependent | sin | 12 | NA |
| 282 | 99.03 | temperature | 20 | 90 | < th | dose dependent | rect. | 21 | 9 |
| 291 | 99.06 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 16 |
| 480 | 100.19 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 4 |
| 495 | 100.23 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 13 |
| 531 | 100.41 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 588 | 100.62 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 8 |
| 639 | 100.88 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 8 |
| 641 | 100.89 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 11 |
| 654 | 100.95 | temperature | 20 | 720 | < th | dose independent | sin | 18 | NA |
| 658 | 100.97 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 683 | 101.06 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 11 |
| 697 | 101.09 | temperature | 20 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 698 | 101.10 | temperature | 20 | 270 | < th | dose independent | sin | 14 | NA |
| 701 | 101.11 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 709 | 101.15 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 710 | 101.15 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 7 |
| 770 | 101.31 | temperature | 20 | 30 | < th | dose independent | sin | 12 | NA |
| 806 | 101.41 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 808 | 101.41 | temperature | 15 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 813 | 101.42 | temperature | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 822 | 101.43 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 843 | 101.50 | humidity | 90 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 868 | 101.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 886 | 101.58 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 892 | 101.59 | temperature | 10 | 30 | > th | dose dependent | sin | 12 | NA |
| 897 | 101.60 | humidity | 90 | 720 | > th | dose independent | rect. | 15 | 4 |
| 921 | 101.65 | temperature | 20 | 30 | > th | dose independent | sin | 12 | NA |
| 925 | 101.66 | humidity | 90 | 720 | > th | dose independent | rect. | 15 | 2 |
| 981 | 101.75 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 12 |