Os05g0531700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0531700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 276.81 | 0.782 | 3.53 | 1.12 | 1.73 | -0.911 | 1.49 | -2.94 | 0.114 | 20 | 25.94 | 4177 | -- | -- |
| 284.77 | 0.786 | 3.63 | 0.554 | 1.69 | -0.604 | 1.43 | -- | 0.00928 | 20 | 35.2 | 4175 | -- | -- |
| 283.08 | 0.784 | 3.53 | 1.09 | 1.72 | -0.911 | -- | -2.94 | 0.115 | 19.9 | 26 | 4008 | -- | -- |
| 290.94 | 0.794 | 3.63 | 0.485 | 1.72 | -0.623 | -- | -- | -0.00272 | 19.9 | 50.01 | 4148 | -- | -- |
| 385.29 | 0.914 | 3.58 | 0.735 | -- | -2.08 | -- | -2.6 | -0.131 | -- | 79.04 | 608 | -- | -- |
| 291.45 | 0.8 | 3.6 | 0.809 | 1.72 | -- | 1.49 | -- | 0.117 | 20.1 | -- | -- | -- | -- |
| 298.04 | 0.808 | 3.6 | 0.769 | 1.72 | -- | -- | -- | 0.119 | 20 | -- | -- | -- | -- |
| 392.92 | 0.923 | 3.63 | 0.266 | -- | -2.09 | -- | -- | -0.21 | -- | 90 | 580 | -- | -- |
| 295.98 | 0.801 | 3.65 | -- | 1.69 | -0.882 | -- | -- | -0.0945 | 19.9 | 67.77 | 5063 | -- | -- |
| 460.17 | 1 | 3.56 | 0.752 | -- | -- | -- | -- | 0.0969 | -- | -- | -- | -- | -- |
| 313.62 | 0.828 | 3.62 | -- | 1.72 | -- | -- | -- | 0.0334 | 20 | -- | -- | -- | -- |
| 394.63 | 0.925 | 3.64 | -- | -- | -2.18 | -- | -- | -0.251 | -- | 99.77 | 584 | -- | -- |
| 475.08 | 1.02 | 3.58 | -- | -- | -- | -- | -- | 0.0135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 265.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 4 | 267.00 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 6 | 267.26 | temperature | 30 | 30 | < th | dose independent | rect. | 8 | 10 |
| 9 | 267.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 8 |
| 20 | 268.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 8 |
| 42 | 269.03 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 6 |
| 47 | 269.34 | temperature | 30 | 90 | < th | dose independent | rect. | 19 | 23 |
| 49 | 269.36 | temperature | 30 | 90 | < th | dose independent | rect. | 21 | 21 |
| 51 | 269.42 | temperature | 30 | 90 | < th | dose independent | rect. | 11 | 7 |
| 57 | 269.67 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 63 | 269.81 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 2 |
| 66 | 269.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 3 |
| 109 | 270.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 9 |
| 150 | 271.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 186 | 271.65 | temperature | 25 | 720 | < th | dose independent | sin | 2 | NA |
| 216 | 272.05 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 18 |
| 238 | 272.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 259 | 272.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 17 |
| 262 | 272.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 15 |
| 301 | 272.82 | temperature | 25 | 720 | > th | dose independent | sin | 2 | NA |
| 320 | 273.06 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 16 |
| 330 | 273.16 | radiation | 40 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 364 | 273.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 409 | 273.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 440 | 274.03 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 457 | 274.16 | radiation | 20 | 270 | < th | dose independent | rect. | 12 | 15 |
| 478 | 274.29 | temperature | 30 | 30 | < th | dose independent | rect. | 8 | 23 |
| 506 | 274.43 | temperature | 25 | 720 | > th | dose dependent | sin | 5 | NA |
| 549 | 274.65 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 1 |
| 552 | 274.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 1 |
| 588 | 274.91 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 1 |
| 619 | 275.02 | atmosphere | 995 | 30 | > th | dose independent | rect. | 8 | 10 |
| 712 | 275.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 723 | 275.50 | atmosphere | 995 | 90 | > th | dose independent | rect. | 19 | 23 |
| 724 | 275.50 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 741 | 275.61 | temperature | 30 | 10 | < th | dose dependent | sin | 19 | NA |
| 748 | 275.65 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 764 | 275.65 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 823 | 275.90 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 918 | 276.26 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 4 |
| 961 | 276.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 9 |