Os05g0530500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : OSK1.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0530500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : OSK1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.73 | 0.186 | 11.9 | 0.537 | 0.442 | -0.791 | -0.19 | -0.0632 | 0.109 | 8.26 | 19.21 | 270 | -- | -- |
| 15.73 | 0.185 | 11.9 | 0.551 | 0.443 | -0.798 | -0.185 | -- | 0.112 | 8.27 | 19.1 | 267 | -- | -- |
| 15.84 | 0.185 | 11.9 | 0.536 | 0.446 | -0.789 | -- | -0.0306 | 0.109 | 8.24 | 19.1 | 265 | -- | -- |
| 15.84 | 0.185 | 11.9 | 0.543 | 0.447 | -0.79 | -- | -- | 0.111 | 8.24 | 19.1 | 265 | -- | -- |
| 22.84 | 0.223 | 11.9 | 0.691 | -- | -1.06 | -- | 0.396 | 0.186 | -- | 19.64 | 454 | -- | -- |
| 25.87 | 0.238 | 11.9 | 0.355 | 0.664 | -- | 0.0739 | -- | -0.0249 | 6.85 | -- | -- | -- | -- |
| 25.89 | 0.238 | 11.9 | 0.356 | 0.664 | -- | -- | -- | -0.0251 | 6.86 | -- | -- | -- | -- |
| 22.93 | 0.223 | 11.9 | 0.62 | -- | -1.05 | -- | -- | 0.163 | -- | 19.2 | 453 | -- | -- |
| 22.82 | 0.222 | 11.9 | -- | 0.492 | -0.585 | -- | -- | 0.0199 | 7.73 | 20.3 | 266 | -- | -- |
| 49.01 | 0.327 | 12 | 0.37 | -- | -- | -- | -- | -0.0124 | -- | -- | -- | -- | -- |
| 29.23 | 0.253 | 11.9 | -- | 0.668 | -- | -- | -- | -0.0647 | 6.83 | -- | -- | -- | -- |
| 31.87 | 0.263 | 11.9 | -- | -- | -0.852 | -- | -- | 0.0602 | -- | 21.89 | 398 | -- | -- |
| 52.63 | 0.339 | 12 | -- | -- | -- | -- | -- | -0.0535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 3 | 14.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 6 | 14.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 14 | 14.31 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 35 | 14.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 21 |
| 37 | 14.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 91 | 14.99 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 98 | 15.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 134 | 15.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 162 | 15.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 191 | 15.45 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 318 | 15.82 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 343 | 15.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 357 | 15.95 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 429 | 16.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 469 | 16.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 470 | 16.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 537 | 16.31 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 662 | 16.51 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 694 | 16.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 795 | 16.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 843 | 16.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 852 | 16.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 930 | 16.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 9 |
| 945 | 16.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 946 | 16.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 959 | 16.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |