Os05g0528900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L9 family protein.
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Os05g0528900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L9 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.55 | 0.377 | 10.3 | 0.0338 | 0.806 | 0.865 | 0.261 | 1.46 | -0.121 | 19.5 | 15.19 | 123 | -- | -- |
| 67.69 | 0.383 | 10.3 | 0.0609 | 0.804 | 0.744 | 0.0712 | -- | -0.109 | 19.2 | 13.42 | 127 | -- | -- |
| 64.7 | 0.375 | 10.3 | 0.027 | 0.805 | 0.858 | -- | 1.41 | -0.118 | 19.4 | 15.89 | 125 | -- | -- |
| 67.59 | 0.383 | 10.3 | 0.044 | 0.803 | 0.754 | -- | -- | -0.12 | 19.5 | 10 | 126 | -- | -- |
| 79.37 | 0.415 | 10.3 | -0.00438 | -- | 0.952 | -- | 0.497 | -0.18 | -- | -2.086 | 746 | -- | -- |
| 75.71 | 0.408 | 10.3 | 0.0517 | 0.853 | -- | 0.213 | -- | -0.0783 | 17.9 | -- | -- | -- | -- |
| 75.82 | 0.408 | 10.3 | 0.0501 | 0.855 | -- | -- | -- | -0.0776 | 17.9 | -- | -- | -- | -- |
| 79.7 | 0.416 | 10.3 | -0.0253 | -- | 0.968 | -- | -- | -0.191 | -- | -3.694 | 734 | -- | -- |
| 67.63 | 0.383 | 10.3 | -- | 0.806 | 0.751 | -- | -- | -0.121 | 19.5 | 10 | 127 | -- | -- |
| 113.68 | 0.498 | 10.3 | 0.0242 | -- | -- | -- | -- | -0.0974 | -- | -- | -- | -- | -- |
| 75.89 | 0.408 | 10.3 | -- | 0.854 | -- | -- | -- | -0.0831 | 17.9 | -- | -- | -- | -- |
| 79.72 | 0.416 | 10.3 | -- | -- | 0.967 | -- | -- | -0.188 | -- | -8.768 | 734 | -- | -- |
| 113.69 | 0.498 | 10.3 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.53 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 5 | 61.13 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 6 |
| 42 | 62.57 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 52 | 63.00 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 58 | 63.12 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 61 | 63.18 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 80 | 63.30 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 81 | 63.30 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 88 | 63.33 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 99 | 63.54 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 118 | 63.69 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 141 | 63.81 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 162 | 63.93 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 190 | 64.04 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 200 | 64.13 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 204 | 64.15 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 217 | 64.22 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 219 | 64.23 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 225 | 64.28 | radiation | 1.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 239 | 64.34 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 241 | 64.36 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 249 | 64.40 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 253 | 64.42 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 284 | 64.51 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 287 | 64.52 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 298 | 64.56 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 301 | 64.56 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 302 | 64.56 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 304 | 64.56 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 336 | 64.63 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 10 |
| 371 | 64.67 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 375 | 64.68 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 9 |
| 380 | 64.71 | radiation | 40.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 393 | 64.76 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 396 | 64.77 | radiation | 1.0 | 30 | > th | dose independent | rect. | 9 | 9 |
| 398 | 64.78 | radiation | 20.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 399 | 64.78 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 403 | 64.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 23 |
| 407 | 64.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 410 | 64.81 | radiation | 20.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 420 | 64.83 | radiation | 20.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 435 | 64.86 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 451 | 64.87 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 487 | 64.91 | radiation | 20.0 | 270 | > th | dose independent | sin | 6 | NA |
| 493 | 64.91 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 521 | 64.95 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 549 | 64.98 | humidity | 70.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 550 | 64.98 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 555 | 64.98 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 556 | 64.99 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 575 | 65.00 | radiation | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 672 | 65.01 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 679 | 65.01 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 741 | 65.08 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 775 | 65.12 | radiation | 20.0 | 270 | < th | dose independent | sin | 7 | NA |
| 776 | 65.12 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 789 | 65.15 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 813 | 65.19 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 824 | 65.20 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 842 | 65.24 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 6 |
| 843 | 65.24 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 9 | 1 |