Os05g0526600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os05g0526600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.84 | 0.308 | 8.11 | 0.201 | 0.922 | 0.475 | 0.007 | -1.46 | -0.101 | 5.85 | 25.81 | 248 | -- | -- |
| 44.89 | 0.312 | 8.16 | 0.0205 | 0.975 | 0.772 | -0.18 | -- | -0.19 | 6.05 | 22.67 | 134 | -- | -- |
| 42.84 | 0.305 | 8.12 | 0.199 | 0.923 | 0.477 | -- | -1.43 | -0.102 | 5.85 | 25.8 | 241 | -- | -- |
| 45.01 | 0.312 | 8.15 | -0.0323 | 0.955 | 0.718 | -- | -- | -0.183 | 5.94 | 22.85 | 194 | -- | -- |
| 73.26 | 0.399 | 8.09 | 0.469 | -- | 1.22 | -- | -1.96 | 0.0756 | -- | 30.2 | 316 | -- | -- |
| 50.46 | 0.333 | 8.17 | -0.189 | 1 | -- | -0.402 | -- | -0.278 | 5.67 | -- | -- | -- | -- |
| 50.85 | 0.334 | 8.17 | -0.191 | 1 | -- | -- | -- | -0.277 | 5.7 | -- | -- | -- | -- |
| 76.39 | 0.407 | 8.13 | 0.135 | -- | 1.23 | -- | -- | -0.0103 | -- | 29.67 | 330 | -- | -- |
| 45.03 | 0.313 | 8.15 | -- | 0.952 | 0.729 | -- | -- | -0.178 | 5.94 | 22.85 | 197 | -- | -- |
| 103 | 0.474 | 8.18 | -0.159 | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
| 51.81 | 0.337 | 8.16 | -- | 0.999 | -- | -- | -- | -0.255 | 5.71 | -- | -- | -- | -- |
| 76.83 | 0.408 | 8.14 | -- | -- | 1.18 | -- | -- | -0.0356 | -- | 29.7 | 330 | -- | -- |
| 103.67 | 0.475 | 8.18 | -- | -- | -- | -- | -- | -0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 2 | 41.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 3 | 41.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 4 | 41.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 6 | 41.62 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 11 |
| 7 | 41.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 11 | 41.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 18 | 41.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 24 | 41.91 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 16 |
| 37 | 41.98 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 21 |
| 86 | 42.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 11 |
| 88 | 42.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 97 | 42.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 98 | 42.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 142 | 42.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 144 | 42.32 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 151 | 42.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 162 | 42.36 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 22 |
| 181 | 42.41 | temperature | 20 | 270 | < th | dose independent | sin | 10 | NA |
| 208 | 42.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 240 | 42.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 254 | 42.53 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 262 | 42.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 270 | 42.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 271 | 42.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 272 | 42.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 278 | 42.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 283 | 42.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 285 | 42.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 292 | 42.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 353 | 42.64 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 3 |
| 366 | 42.65 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 414 | 42.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 443 | 42.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 472 | 42.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 521 | 42.79 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 522 | 42.79 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 575 | 42.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 15 |
| 596 | 42.85 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 699 | 42.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 749 | 42.94 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 752 | 42.94 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 775 | 42.95 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 943 | 43.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 946 | 43.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 950 | 43.04 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |