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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0525800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.034) R2 : 0.296
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 8.87 (0.642) R2dE : 0.294 R2E : 0.292
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.108 (0.0715) R2dN8 : 0.00451 R2N8 : 0.00188
σ : 0.638
deviance : 187.7
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.93
memory length : 80
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.39
open length of G : 0.342

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.18 0.643 2.9 -0.0252 0.0523 5.83 -0.289 13.6 0.0957 4.52 18.04 121 1.25 0.283
187.27 0.637 2.89 -0.0705 0.0521 8.89 -0.266 -- 0.0966 5.05 17.8 61 1.07 0.408
187.38 0.638 2.9 -0.0216 0.0539 5.84 -- 13.4 0.0976 5.68 18.03 122 1.25 0.348
187.44 0.638 2.89 -0.0702 0.0528 8.87 -- -- 0.0988 5.81 17.82 62 1.07 0.604
187.53 0.638 2.9 -0.0211 -- 5.85 -- 13.4 0.0986 -- 18.03 121 1.25 0.337
265.5 0.764 2.9 -0.00526 0.112 -- 0.0432 -- 0.0798 3.55 -- -- -- --
265.5 0.763 2.9 -0.00598 0.113 -- -- -- 0.0795 3.63 -- -- -- --
187.58 0.638 2.89 -0.0687 -- 8.89 -- -- 0.1 -- 17.92 77 1.39 0.278
187.57 0.638 2.89 -- 0.0517 8.86 -- -- 0.106 5.85 17.84 62 1.06 0.831
266.21 0.762 2.9 -0.00126 -- -- -- -- 0.0825 -- -- -- -- --
265.5 0.762 2.9 -- 0.113 -- -- -- 0.0802 3.63 -- -- -- --
187.7 0.638 2.89 -- -- 8.87 -- -- 0.108 -- 17.93 80 1.39 0.342
266.21 0.762 2.9 -- -- -- -- -- 0.0827 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 220.04 temperature 20.0 90 < th dose dependent rect. 1 1
2 220.63 temperature 20.0 10 < th dose dependent rect. 2 1
4 223.20 temperature 20.0 10 < th dose dependent rect. 24 3
14 227.79 temperature 20.0 90 < th dose independent rect. 24 1
28 240.90 humidity 90.0 10 < th dose independent rect. 2 1
35 245.02 precipitation 0.1 720 > th dose dependent rect. 17 1
61 249.00 temperature 20.0 270 < th dose independent rect. 21 5
91 251.95 atmosphere 1010.0 10 < th dose independent rect. 6 1
95 252.09 atmosphere 1010.0 30 < th dose dependent rect. 6 1
106 252.69 temperature 20.0 270 < th dose independent rect. 17 9
121 252.96 temperature 25.0 30 > th dose dependent rect. 6 1
147 253.51 radiation 10.0 30 < th dose independent rect. 6 1
162 253.92 temperature 20.0 90 < th dose dependent rect. 19 7
173 253.97 temperature 20.0 90 < th dose dependent rect. 10 16
176 253.99 precipitation 0.1 720 > th dose independent rect. 17 1
205 254.15 wind 3.0 30 > th dose independent rect. 6 1
216 254.32 temperature 25.0 30 > th dose dependent rect. 2 5
227 254.40 temperature 20.0 270 > th dose independent rect. 17 9
241 254.51 temperature 20.0 270 > th dose independent sin 16 NA
317 255.23 temperature 25.0 90 > th dose independent rect. 5 2
344 255.56 atmosphere 1000.0 1440 > th dose independent rect. 3 1
389 255.85 atmosphere 1000.0 1440 < th dose dependent rect. 2 1
396 255.89 atmosphere 1000.0 1440 < th dose independent rect. 2 1
423 256.05 temperature 20.0 90 < th dose dependent rect. 21 1
433 256.09 temperature 20.0 90 < th dose independent rect. 20 1
501 256.35 atmosphere 1005.0 30 > th dose independent rect. 1 1
528 256.52 temperature 20.0 270 < th dose independent sin 16 NA
543 256.58 temperature 20.0 90 < th dose independent sin 12 NA
569 256.72 temperature 20.0 90 < th dose independent rect. 23 20
575 256.75 temperature 20.0 90 < th dose independent rect. 23 16
581 256.77 temperature 20.0 90 < th dose independent rect. 23 18
584 256.78 temperature 20.0 90 < th dose independent rect. 23 13
635 257.07 temperature 20.0 270 > th dose independent rect. 18 14
636 257.07 temperature 25.0 720 > th dose dependent rect. 5 2
651 257.15 radiation 1.0 10 < th dose dependent rect. 5 20
667 257.22 radiation 1.0 10 > th dose independent rect. 18 1
684 257.25 humidity 60.0 30 < th dose independent rect. 17 2
705 257.27 radiation 1.0 30 < th dose independent rect. 5 20
706 257.28 radiation 1.0 30 < th dose independent rect. 13 12
712 257.29 radiation 1.0 30 < th dose independent rect. 15 10
739 257.35 radiation 1.0 10 < th dose dependent rect. 13 12
746 257.36 radiation 1.0 10 < th dose dependent rect. 15 10
792 257.51 wind 1.0 30 > th dose dependent rect. 6 1
818 257.57 temperature 20.0 270 > th dose independent rect. 11 13
822 257.57 temperature 20.0 90 > th dose independent rect. 17 23
867 257.63 temperature 25.0 90 > th dose independent rect. 1 6
869 257.63 temperature 20.0 90 < th dose dependent rect. 23 12
873 257.64 temperature 20.0 90 < th dose dependent sin 12 NA
886 257.68 temperature 20.0 90 > th dose independent rect. 18 17
898 257.71 atmosphere 1000.0 1440 < th dose dependent rect. 5 1
908 257.74 temperature 10.0 270 > th dose dependent rect. 18 13
954 257.79 temperature 20.0 90 < th dose dependent rect. 23 21
985 257.87 temperature 20.0 90 < th dose dependent rect. 23 18