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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0525700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.02) R2 : 0.0053
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0657 (0.0421) R2dN8 : 0.00684 R2N8 : 0.0053
σ : 0.377
deviance : 65.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.44 0.368 3.26 0.058 0.053 0.665 -0.471 0.244 -0.0291 4.13 20.7 16 -- --
61.46 0.368 3.25 0.0688 0.0612 0.599 -0.434 -- -0.0276 4.42 20.7 16 -- --
61.8 0.369 3.25 0.0783 0.0814 0.62 -- -0.0227 -0.023 7.17 20.7 16 -- --
61.8 0.369 3.25 0.0775 0.0813 0.626 -- -- -0.0231 7.19 20.7 16 -- --
62.15 0.369 3.25 0.0786 -- 0.62 -- -0.00704 -0.022 -- 20.7 17 -- --
64.22 0.376 3.26 -0.032 0.0899 -- -0.445 -- -0.073 3.75 -- -- -- --
64.76 0.377 3.26 -0.0252 0.095 -- -- -- -0.0705 4.98 -- -- -- --
62.15 0.369 3.25 0.0783 -- 0.622 -- -- -0.022 -- 20.7 17 -- --
61.94 0.369 3.25 -- 0.0821 0.586 -- -- -0.0341 6.97 20.7 16 -- --
65.23 0.377 3.26 -0.0217 -- -- -- -- -0.0681 -- -- -- -- --
64.77 0.376 3.26 -- 0.0946 -- -- -- -0.0677 4.98 -- -- -- --
62.3 0.369 3.26 -- -- 0.583 -- -- -0.0328 -- 20.7 17 -- --
65.25 0.377 3.26 -- -- -- -- -- -0.0657 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.85 radiation 1.0 14400 < th dose dependent rect. 3 1
3 58.19 temperature 20.0 30 > th dose dependent rect. 2 1
4 58.24 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 58.27 wind 3.0 30 < th dose dependent rect. 2 1
8 58.29 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 58.30 temperature 20.0 30 > th dose independent rect. 2 1
20 58.35 wind 1.0 30 < th dose independent rect. 2 1
21 58.35 wind 9.0 1440 < th dose independent rect. 3 1
22 58.35 temperature 10.0 1440 > th dose independent rect. 3 1
25 58.35 temperature 30.0 1440 < th dose independent rect. 3 1
29 58.35 humidity 50.0 1440 > th dose independent rect. 3 1
38 58.35 atmosphere 995.0 1440 > th dose independent rect. 3 1
39 58.35 radiation 1.0 1440 < th dose independent rect. 3 1
59 58.35 temperature 10.0 1440 > th dose independent rect. 4 23
77 58.43 humidity 90.0 30 > th dose independent rect. 2 1
81 58.47 humidity 70.0 30 > th dose dependent rect. 2 1
83 58.48 humidity 50.0 30 > th dose dependent rect. 2 1
86 58.50 temperature 10.0 30 > th dose independent rect. 2 1
88 58.50 temperature 30.0 30 < th dose independent rect. 2 1
89 58.50 humidity 50.0 30 > th dose independent rect. 2 1
93 58.50 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 58.50 radiation 1.0 30 < th dose independent rect. 2 1
100 58.50 precipitation 0.1 30 < th dose independent rect. 2 1
101 58.50 temperature 10.0 30 > th dose independent rect. 3 23
103 58.50 radiation 1.0 30 < th dose dependent rect. 2 1
108 58.50 precipitation 0.1 30 < th dose dependent rect. 2 1
111 58.60 atmosphere 1000.0 30 > th dose independent rect. 3 23
116 58.76 atmosphere 1015.0 30 < th dose dependent rect. 2 1
117 58.88 humidity 50.0 720 > th dose independent rect. 23 16
119 58.88 temperature 30.0 30 < th dose dependent rect. 2 1
130 59.08 wind 1.0 30 > th dose independent rect. 2 1
136 59.17 wind 9.0 30 < th dose independent rect. 3 23
139 59.23 precipitation 0.1 30 < th dose independent rect. 3 23
140 59.23 precipitation 0.1 30 < th dose dependent rect. 3 23
144 59.32 temperature 20.0 30 > th dose independent rect. 3 23
148 59.34 temperature 10.0 30 > th dose dependent rect. 3 23
150 59.36 humidity 60.0 720 < th dose independent rect. 18 1
151 59.36 humidity 60.0 720 < th dose dependent rect. 18 1
181 59.43 radiation 10.0 30 < th dose independent rect. 3 23
208 59.57 humidity 50.0 1440 > th dose independent rect. 17 10
242 59.61 humidity 50.0 1440 > th dose independent rect. 17 3
246 59.65 humidity 50.0 1440 < th dose independent rect. 16 2
252 59.65 humidity 50.0 1440 > th dose independent rect. 17 6
343 59.70 humidity 50.0 1440 > th dose independent rect. 17 16
351 59.72 wind 7.0 720 < th dose independent rect. 15 14
353 59.72 radiation 10.0 30 < th dose dependent rect. 3 23
615 60.33 temperature 20.0 30 > th dose independent rect. 18 13
616 60.33 wind 5.0 10 < th dose dependent rect. 22 5
622 60.38 wind 9.0 720 > th dose independent rect. 12 5
687 60.53 wind 9.0 720 > th dose dependent rect. 12 5
693 60.54 humidity 50.0 30 > th dose independent rect. 3 23
713 60.59 atmosphere 1000.0 720 > th dose independent rect. 3 8
716 60.61 humidity 50.0 4320 > th dose independent rect. 14 1
726 60.66 precipitation 0.1 720 < th dose independent rect. 23 16
729 60.66 humidity 50.0 4320 < th dose dependent rect. 14 1
730 60.66 precipitation 0.1 720 < th dose dependent rect. 23 16
738 60.69 wind 5.0 10 < th dose dependent rect. 20 7
740 60.71 temperature 10.0 30 > th dose dependent rect. 3 19
742 60.72 wind 7.0 720 < th dose independent rect. 13 16
743 60.72 wind 7.0 720 > th dose dependent rect. 15 2
758 60.73 temperature 30.0 10 < th dose dependent rect. 22 19
763 60.75 wind 7.0 720 < th dose independent rect. 17 10
764 60.75 humidity 80.0 30 > th dose dependent rect. 22 5
779 60.77 wind 9.0 1440 > th dose independent rect. 12 1
829 60.81 wind 1.0 10 < th dose independent rect. 23 4
830 60.81 wind 9.0 720 < th dose independent rect. 15 8
835 60.83 radiation 10.0 30 < th dose independent rect. 3 19
852 60.85 temperature 20.0 10 < th dose independent rect. 23 1
857 60.85 temperature 20.0 10 < th dose independent rect. 23 19
860 60.86 wind 1.0 10 < th dose independent rect. 6 21
864 60.87 humidity 50.0 4320 < th dose independent rect. 14 1
868 60.88 wind 7.0 720 < th dose independent rect. 15 6
894 60.89 wind 9.0 1440 > th dose dependent rect. 12 1
907 60.91 humidity 90.0 14400 > th dose dependent rect. 5 1
908 60.92 radiation 40.0 1440 < th dose independent rect. 4 4
925 60.94 wind 1.0 10 < th dose independent rect. 14 13
963 60.96 temperature 30.0 30 < th dose dependent rect. 22 5
979 60.97 temperature 20.0 10 < th dose independent rect. 23 13