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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0525600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0217) R2 : 0.00328
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0559 (0.0456) R2dN8 : 0.00423 R2N8 : 0.00328
σ : 0.408
deviance : 76.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.52 0.383 3 -0.139 0.105 1.68 -0.339 0.664 -0.0478 7.15 58.49 29 -- --
66.46 0.38 3 -0.133 0.104 1.72 -0.328 -- -0.0469 6.95 58.82 32 -- --
66.58 0.38 3 -0.146 0.104 1.94 -- 0.825 -0.0471 7.46 59 32 -- --
66.72 0.38 3 -0.139 0.103 1.72 -- -- -0.0471 7.55 58.82 32 -- --
67.15 0.382 3 -0.143 -- 1.96 -- 0.812 -0.0443 -- 58.92 32 -- --
73.78 0.403 3.01 -0.19 0.147 -- -0.325 -- -0.0789 8.96 -- -- -- --
74.13 0.403 3.01 -0.2 0.147 -- -- -- -0.0787 9.38 -- -- -- --
67.3 0.382 3 -0.134 -- 1.75 -- -- -0.0428 -- 58.77 32 -- --
67.21 0.382 3 -- 0.102 1.76 -- -- -0.0288 7.52 58.72 32 -- --
75.4 0.406 3.01 -0.201 -- -- -- -- -0.0782 -- -- -- -- --
75.19 0.406 3 -- 0.147 -- -- -- -0.0564 9.48 -- -- -- --
67.76 0.383 3 -- -- 1.79 -- -- -0.0264 -- 58.66 32 -- --
76.46 0.408 3.01 -- -- -- -- -- -0.0559 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.71 precipitation 0.1 270 > th dose independent rect. 8 1
2 68.71 precipitation 0.1 270 > th dose dependent rect. 8 1
11 69.49 temperature 20.0 720 > th dose independent rect. 24 5
15 69.60 temperature 20.0 720 < th dose independent rect. 24 7
16 69.61 radiation 10.0 10 > th dose dependent rect. 15 17
21 69.69 radiation 30.0 30 > th dose dependent rect. 15 17
27 69.71 atmosphere 995.0 43200 < th dose dependent rect. 13 20
30 69.73 atmosphere 995.0 43200 > th dose independent rect. 22 17
34 69.73 atmosphere 995.0 43200 < th dose independent rect. 18 21
36 69.74 temperature 20.0 720 > th dose independent rect. 3 1
39 69.74 radiation 30.0 30 > th dose independent rect. 15 17
41 69.75 temperature 15.0 14400 > th dose independent rect. 6 3
42 69.75 wind 3.0 90 < th dose dependent rect. 8 5
45 69.77 atmosphere 995.0 43200 > th dose independent sin 5 NA
48 69.78 atmosphere 995.0 43200 < th dose independent rect. 21 18
52 69.78 atmosphere 995.0 43200 < th dose dependent rect. 12 14
59 69.80 radiation 1.0 720 < th dose dependent rect. 6 1
60 69.80 atmosphere 995.0 43200 < th dose dependent rect. 11 18
66 69.82 atmosphere 995.0 43200 > th dose independent rect. 17 21
70 69.83 atmosphere 995.0 43200 < th dose dependent rect. 15 19
75 69.86 atmosphere 995.0 43200 < th dose independent sin 5 NA
76 69.86 wind 3.0 43200 > th dose independent rect. 8 1
77 69.86 wind 9.0 14400 < th dose independent rect. 10 1
79 69.86 wind 5.0 43200 < th dose dependent rect. 8 1
84 69.87 wind 1.0 90 < th dose dependent rect. 11 1
98 69.90 atmosphere 995.0 43200 < th dose dependent sin 17 NA
99 69.90 wind 9.0 14400 > th dose dependent rect. 19 1
106 69.92 temperature 15.0 14400 < th dose independent rect. 5 4
121 69.94 temperature 15.0 14400 > th dose independent rect. 8 1
123 69.94 wind 5.0 14400 < th dose independent rect. 8 3
125 69.94 wind 3.0 14400 > th dose dependent rect. 8 2
129 69.95 wind 3.0 1440 > th dose independent rect. 8 3
133 69.95 wind 1.0 14400 < th dose dependent rect. 4 1
148 69.97 humidity 90.0 270 > th dose independent rect. 10 1
149 69.97 precipitation 0.1 720 > th dose independent rect. 6 1
154 69.97 precipitation 0.1 720 > th dose dependent rect. 6 1
157 69.98 wind 1.0 14400 > th dose independent rect. 4 1
158 69.98 atmosphere 1005.0 1440 < th dose independent rect. 10 1
163 69.98 humidity 90.0 270 > th dose dependent rect. 10 1
164 69.98 radiation 40.0 30 > th dose dependent rect. 11 1
173 69.99 temperature 15.0 14400 > th dose independent rect. 5 16
180 70.01 wind 1.0 14400 < th dose independent rect. 4 1
187 70.02 atmosphere 1005.0 1440 > th dose independent rect. 10 1
196 70.03 wind 3.0 1440 < th dose independent rect. 8 3
200 70.03 wind 9.0 14400 < th dose independent rect. 4 7
206 70.04 temperature 15.0 14400 < th dose independent rect. 7 3
208 70.04 radiation 20.0 4320 > th dose independent rect. 16 17
211 70.04 atmosphere 995.0 43200 < th dose dependent rect. 13 12
213 70.05 wind 1.0 90 < th dose independent rect. 11 1
214 70.05 radiation 1.0 14400 > th dose independent rect. 6 1
219 70.06 radiation 1.0 14400 < th dose independent rect. 6 1
228 70.07 temperature 15.0 14400 > th dose independent rect. 20 2
229 70.07 temperature 20.0 720 < th dose independent rect. 3 4
247 70.08 temperature 15.0 14400 < th dose independent rect. 4 17
274 70.11 radiation 40.0 30 > th dose dependent rect. 13 23
275 70.12 temperature 15.0 14400 < th dose independent rect. 20 1
298 70.14 temperature 20.0 720 < th dose independent rect. 1 1
299 70.14 radiation 1.0 1440 < th dose independent rect. 6 1
303 70.14 radiation 1.0 14400 > th dose independent rect. 4 3
320 70.14 temperature 25.0 30 > th dose dependent rect. 6 1
344 70.16 radiation 1.0 14400 < th dose independent rect. 2 5
345 70.16 wind 9.0 14400 > th dose independent rect. 4 7
347 70.16 wind 9.0 14400 < th dose independent rect. 1 10
361 70.17 radiation 1.0 1440 > th dose independent rect. 6 1
364 70.17 radiation 1.0 14400 < th dose independent rect. 4 3
390 70.18 precipitation 0.1 43200 < th dose independent rect. 10 1
399 70.18 temperature 15.0 14400 > th dose independent rect. 13 20
402 70.18 precipitation 0.1 43200 < th dose dependent rect. 10 1
411 70.19 temperature 15.0 14400 > th dose independent rect. 15 10
422 70.19 temperature 15.0 14400 < th dose independent rect. 13 20
431 70.19 atmosphere 1010.0 30 < th dose dependent rect. 6 1
433 70.20 temperature 15.0 14400 > th dose independent sin 0 NA
435 70.20 wind 9.0 14400 > th dose independent rect. 19 1
482 70.21 temperature 15.0 14400 > th dose independent sin 16 NA
493 70.21 atmosphere 995.0 43200 < th dose independent rect. 7 19
509 70.22 atmosphere 995.0 43200 < th dose independent rect. 5 3
511 70.22 temperature 20.0 14400 < th dose independent rect. 15 4
529 70.22 atmosphere 995.0 43200 < th dose independent rect. 3 20
547 70.22 atmosphere 995.0 43200 < th dose dependent rect. 21 13
559 70.23 atmosphere 995.0 43200 < th dose independent rect. 4 5
561 70.23 temperature 15.0 14400 > th dose independent rect. 16 6
562 70.23 atmosphere 995.0 43200 < th dose independent rect. 3 7
567 70.23 temperature 15.0 14400 > th dose independent rect. 13 16
586 70.23 atmosphere 995.0 43200 < th dose dependent rect. 4 4
588 70.23 atmosphere 995.0 43200 < th dose dependent rect. 2 7
600 70.24 atmosphere 995.0 43200 > th dose independent rect. 3 7
628 70.24 atmosphere 995.0 43200 < th dose dependent sin 9 NA
634 70.25 temperature 15.0 14400 > th dose independent no NA NA
635 70.25 atmosphere 1010.0 30 < th dose independent rect. 6 1
638 70.25 temperature 20.0 14400 > th dose independent rect. 15 4
640 70.25 precipitation 0.1 43200 < th dose independent rect. 7 5
666 70.25 temperature 20.0 14400 < th dose dependent rect. 16 4
667 70.25 precipitation 0.1 43200 < th dose dependent rect. 7 5
676 70.26 atmosphere 995.0 43200 > th dose independent rect. 4 5
678 70.26 precipitation 0.1 43200 > th dose independent rect. 7 6
681 70.26 atmosphere 995.0 43200 > th dose independent rect. 2 9
690 70.26 temperature 15.0 14400 < th dose independent rect. 13 16
717 70.26 temperature 20.0 14400 < th dose dependent rect. 18 1
718 70.26 atmosphere 1000.0 43200 < th dose dependent rect. 8 1
720 70.26 precipitation 0.1 43200 > th dose dependent rect. 7 5
736 70.27 temperature 20.0 14400 > th dose independent rect. 8 11
753 70.27 atmosphere 995.0 43200 > th dose independent rect. 6 19
773 70.28 temperature 20.0 14400 > th dose independent rect. 15 1
779 70.28 humidity 80.0 14400 > th dose independent rect. 8 4
780 70.28 humidity 80.0 14400 < th dose independent rect. 8 4
781 70.28 wind 1.0 90 < th dose independent rect. 7 5
788 70.28 temperature 10.0 43200 < th dose independent rect. 9 11
802 70.28 atmosphere 995.0 43200 > th dose independent rect. 4 19
827 70.28 temperature 10.0 43200 < th dose dependent rect. 9 11
829 70.29 temperature 15.0 14400 < th dose independent sin 15 NA
844 70.29 temperature 20.0 14400 < th dose independent rect. 8 11
886 70.30 radiation 20.0 4320 > th dose independent rect. 6 3
897 70.30 precipitation 0.1 43200 < th dose independent rect. 24 8
949 70.30 precipitation 0.1 43200 < th dose dependent rect. 24 8
951 70.31 temperature 15.0 14400 < th dose independent no NA NA
954 70.31 atmosphere 995.0 43200 > th dose independent rect. 5 3
959 70.31 precipitation 0.1 43200 > th dose independent rect. 24 8
996 70.31 temperature 15.0 14400 < th dose independent rect. 6 23