FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0524600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.1.37) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0248) R2 : 0.242
β1 : -0.0491 (0.0895) R2dD : 0.000542 R2D : -0.00475
β2 : -- (--) R2dC : -- R2C : --
β3 : 8.42 (0.828) R2dE : 1.77 R2E : -0.799
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.7 (2) R2dD*E : 1.05 R2D*E : -1.54
γ1 : -0.0098 (0.0513) R2dN8 : 8.13e-05 R2N8 : -0.00863
σ : 0.448
deviance : 92.64
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 7.101
memory length : 12
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1.19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.53 0.447 3.03 -0.0424 0.174 8.36 -0.266 15.9 -0.0105 10.6 7.103 11 12 1.08
120.02 0.51 3.02 -0.196 0.214 1.17 -0.358 -- -0.161 10.8 11.49 224 12.2 3.82
90.8 0.444 3.04 -0.0494 0.174 8.42 -- 15.9 -0.011 10.9 7.1 10 12 1.12
117.18 0.504 2.99 -0.254 0.225 -0.211 -- -- -0.0403 11.3 11.27 465 12.2 5.38
92.64 0.448 3.04 -0.0491 -- 8.42 -- 15.7 -0.0098 -- 7.101 12 12 1.19
116.51 0.506 2.99 -0.232 0.222 -- -0.44 -- -0.0368 10.9 -- -- -- --
117.31 0.507 2.99 -0.25 0.224 -- -- -- -0.0378 11.2 -- -- -- --
120.27 0.511 3 -0.265 -- -0.255 -- -- -0.0439 -- 10.69 451 12.2 7.02
118.88 0.508 2.99 -- 0.227 -0.149 -- -- -0.0113 11.4 11.01 453 12.2 5.79
120.44 0.513 3 -0.255 -- -- -- -- -0.0399 -- -- -- -- --
118.95 0.51 2.99 -- 0.226 -- -- -- -0.0101 11.3 -- -- -- --
122.07 0.515 2.99 -- -- -0.145 -- -- -0.0132 -- 10.89 418 12.4 7.21
122.15 0.516 2.99 -- -- -- -- -- -0.0116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.95 wind 7 10 > th dose dependent rect. 12 1
3 97.97 wind 7 10 > th dose independent rect. 12 1
5 103.41 humidity 70 720 < th dose dependent rect. 6 3
41 103.82 humidity 70 720 > th dose independent rect. 2 7
42 103.85 humidity 90 720 < th dose dependent rect. 24 7
43 103.90 humidity 90 720 < th dose dependent rect. 24 5
58 104.14 humidity 90 720 < th dose dependent rect. 1 2
60 104.20 wind 9 270 > th dose dependent rect. 9 1
71 104.38 humidity 70 10 < th dose dependent rect. 7 3
101 104.75 humidity 70 720 < th dose independent rect. 6 3
121 104.98 humidity 90 720 < th dose independent rect. 2 2
135 105.10 humidity 90 720 < th dose independent rect. 24 4
136 105.13 humidity 70 1440 > th dose independent rect. 4 4
144 105.21 humidity 70 1440 > th dose independent rect. 22 10
145 105.23 humidity 70 1440 > th dose independent rect. 7 1
154 105.32 humidity 70 4320 < th dose independent rect. 20 11
155 105.33 wind 9 270 > th dose independent rect. 9 1
156 105.33 humidity 70 4320 < th dose independent rect. 6 1
196 105.42 humidity 70 1440 > th dose independent rect. 20 12
215 105.53 wind 1 10 < th dose independent rect. 7 5
230 105.61 wind 1 10 < th dose independent rect. 9 3
316 105.74 radiation 20 270 > th dose dependent rect. 6 1
353 105.80 wind 1 10 < th dose dependent rect. 7 5
356 105.83 wind 1 10 < th dose dependent rect. 7 3
360 105.86 radiation 20 270 > th dose independent rect. 6 1
436 106.07 radiation 30 10 > th dose dependent rect. 7 3
475 106.11 humidity 60 30 < th dose independent rect. 17 17
557 106.17 radiation 30 10 > th dose independent rect. 7 3
822 106.25 wind 1 10 < th dose dependent rect. 9 1
922 106.43 wind 1 10 < th dose independent rect. 9 1
994 106.58 radiation 40 30 > th dose dependent rect. 9 1