Os05g0524500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0524500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.77 | 0.348 | 2.97 | -1.12 | 0.0698 | 15.4 | -0.244 | -90.6 | 0.0493 | 5.92 | 996.3 | 544 | -- | -- |
| 56.02 | 0.351 | 2.78 | 0.0415 | 0.0484 | -0.0979 | -0.317 | -- | 0.0439 | 6.13 | 996.3 | 544 | -- | -- |
| 54.91 | 0.345 | 2.97 | -1.12 | 0.0694 | 15.4 | -- | -90.3 | 0.0498 | 5.34 | 996.3 | 541 | -- | -- |
| 54.71 | 0.344 | 2.78 | 0.024 | 0.0615 | 0.719 | -- | -- | 0.0486 | 6.51 | 994.7 | 359 | -- | -- |
| 55.15 | 0.346 | 2.96 | -1.06 | -- | 15.7 | -- | -92.1 | 0.0542 | -- | 996.1 | 526 | -- | -- |
| 56.05 | 0.351 | 2.78 | 0.0391 | 0.0507 | -- | -0.31 | -- | 0.0447 | 6.1 | -- | -- | -- | -- |
| 56.25 | 0.351 | 2.78 | 0.0354 | 0.0541 | -- | -- | -- | 0.0455 | 4.47 | -- | -- | -- | -- |
| 54.92 | 0.345 | 2.78 | 0.0253 | -- | 0.71 | -- | -- | 0.0515 | -- | 994.7 | 373 | -- | -- |
| 54.69 | 0.344 | 2.78 | -- | 0.0691 | 0.736 | -- | -- | 0.0475 | 5.29 | 994.7 | 379 | -- | -- |
| 56.41 | 0.351 | 2.78 | 0.0375 | -- | -- | -- | -- | 0.0469 | -- | -- | -- | -- | -- |
| 56.28 | 0.351 | 2.78 | -- | 0.0548 | -- | -- | -- | 0.0415 | 4.46 | -- | -- | -- | -- |
| 54.94 | 0.345 | 2.78 | -- | -- | 0.711 | -- | -- | 0.0487 | -- | 994.7 | 376 | -- | -- |
| 56.44 | 0.351 | 2.78 | -- | -- | -- | -- | -- | 0.0427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.09 | humidity | 90.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 4 | 49.09 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 39 | 49.09 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 42 | 49.09 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 111 | 50.78 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 118 | 50.78 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 150 | 51.72 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 152 | 51.80 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 200 | 52.18 | radiation | 1.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 209 | 52.24 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 284 | 52.62 | temperature | 25.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 287 | 52.64 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 301 | 52.67 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 6 | 12 |
| 305 | 52.73 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 307 | 52.74 | humidity | 90.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 324 | 52.85 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 348 | 53.03 | humidity | 60.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 355 | 53.07 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 397 | 53.16 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 411 | 53.18 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 415 | 53.19 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 18 | 4 |
| 416 | 53.21 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 423 | 53.25 | temperature | 25.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 449 | 53.32 | temperature | 25.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 481 | 53.41 | humidity | 80.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 482 | 53.41 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 16 | 2 |
| 530 | 53.59 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 11 |
| 562 | 53.67 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 564 | 53.68 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 592 | 53.74 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 658 | 53.79 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 671 | 53.82 | wind | 3.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 680 | 53.84 | humidity | 90.0 | 10 | > th | dose independent | rect. | 8 | 11 |
| 688 | 53.88 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 696 | 53.89 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 798 | 54.05 | wind | 5.0 | 90 | < th | dose independent | rect. | 16 | 2 |
| 830 | 54.08 | humidity | 70.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 842 | 54.09 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 1 |
| 901 | 54.14 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 5 |
| 912 | 54.17 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 921 | 54.19 | wind | 3.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 930 | 54.20 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 22 |
| 954 | 54.22 | wind | 3.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 969 | 54.23 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 1 | 1 |