Os05g0523200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0523200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.49 | 0.553 | 6.8 | 0.612 | 0.344 | -1.22 | -0.0498 | -0.408 | 0.14 | 20.7 | 1014 | 4910 | -- | -- |
| 139.12 | 0.549 | 6.8 | 0.686 | 0.343 | -1.25 | -0.0385 | -- | 0.15 | 20.7 | 1014 | 4856 | -- | -- |
| 138.5 | 0.548 | 6.8 | 0.611 | 0.343 | -1.22 | -- | -0.404 | 0.139 | 20.6 | 1014 | 4886 | -- | -- |
| 139.11 | 0.549 | 6.79 | 0.694 | 0.342 | -1.25 | -- | -- | 0.158 | 20.7 | 1014 | 4871 | -- | -- |
| 145.07 | 0.561 | 6.79 | 0.606 | -- | -1.25 | -- | -0.387 | 0.136 | -- | 1014 | 4796 | -- | -- |
| 188.59 | 0.644 | 6.84 | 0.583 | 0.364 | -- | -0.0126 | -- | -0.0286 | 20.5 | -- | -- | -- | -- |
| 188.59 | 0.643 | 6.84 | 0.584 | 0.364 | -- | -- | -- | -0.0286 | 20.5 | -- | -- | -- | -- |
| 145.65 | 0.562 | 6.79 | 0.668 | -- | -1.21 | -- | -- | 0.15 | -- | 1014 | 4800 | -- | -- |
| 150.63 | 0.572 | 6.81 | -- | 0.333 | -1.19 | -- | -- | 0.0719 | 20.9 | 1014 | 4670 | -- | -- |
| 195.97 | 0.654 | 6.83 | 0.582 | -- | -- | -- | -- | -0.0322 | -- | -- | -- | -- | -- |
| 197.58 | 0.658 | 6.85 | -- | 0.361 | -- | -- | -- | -0.0936 | 20.6 | -- | -- | -- | -- |
| 156.92 | 0.583 | 6.8 | -- | -- | -1.21 | -- | -- | 0.0701 | -- | 1014 | 4612 | -- | -- |
| 204.91 | 0.668 | 6.84 | -- | -- | -- | -- | -- | -0.0968 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.63 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 2 |
| 16 | 135.68 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 210 | 138.34 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 284 | 139.13 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 13 |
| 285 | 139.14 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 7 | 13 |
| 314 | 139.35 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 321 | 139.39 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 7 | 12 |
| 330 | 139.43 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 0 | NA |
| 338 | 139.46 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 343 | 139.48 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 348 | 139.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 362 | 139.56 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 369 | 139.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 399 | 139.68 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 422 | 139.78 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 428 | 139.80 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 437 | 139.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 449 | 139.86 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 7 |
| 472 | 139.94 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 473 | 139.94 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 493 | 140.03 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 526 | 140.14 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 550 | 140.23 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 568 | 140.30 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 638 | 140.46 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 767 | 140.83 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 773 | 140.84 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 775 | 140.84 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 816 | 140.93 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 17 |
| 919 | 141.13 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 23 |