Os05g0522600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os05g0522600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.87 | 0.628 | 11.3 | 3.54 | 2.1 | 2.75 | -0.115 | -3.49 | 0.767 | 17.3 | 0.05993 | 744 | -- | -- |
| 176.98 | 0.62 | 11.3 | 3.5 | 2.66 | 4.02 | 1.79 | -- | 0.779 | 18.4 | 0.7601 | 863 | -- | -- |
| 178.86 | 0.623 | 11.3 | 3.53 | 2.1 | 2.75 | -- | -3.35 | 0.765 | 17.3 | 0.05 | 744 | -- | -- |
| 187.05 | 0.637 | 11.3 | 3.51 | 2.6 | 3.94 | -- | -- | 0.793 | 18.5 | 0.4526 | 873 | -- | -- |
| 196.02 | 0.652 | 11.2 | 3.59 | -- | 1.76 | -- | -0.726 | 0.915 | -- | 0.4361 | 1366 | -- | -- |
| 208.57 | 0.677 | 11.3 | 3.05 | 0.195 | -- | 1.94 | -- | 0.613 | 15.4 | -- | -- | -- | -- |
| 215.66 | 0.688 | 11.3 | 3.08 | 0.337 | -- | -- | -- | 0.623 | 11.5 | -- | -- | -- | -- |
| 195.65 | 0.651 | 11.2 | 3.57 | -- | 1.74 | -- | -- | 0.905 | -- | 0.47 | 1374 | -- | -- |
| 465.95 | 1.01 | 11.3 | -- | 0.372 | 0.0581 | -- | -- | 0.281 | 11 | 9.732 | 885 | -- | -- |
| 222.8 | 0.697 | 11.3 | 3.07 | -- | -- | -- | -- | 0.619 | -- | -- | -- | -- | -- |
| 466 | 1.01 | 11.3 | -- | 0.308 | -- | -- | -- | 0.28 | 10.9 | -- | -- | -- | -- |
| 463.67 | 1 | 11.4 | -- | -- | -0.351 | -- | -- | 0.252 | -- | 26.07 | 102 | -- | -- |
| 471.88 | 1.01 | 11.4 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 2 | 167.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 3 | 167.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 8 | 168.22 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 14 | 169.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 15 | 169.34 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 17 | 171.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 18 |
| 19 | 171.45 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 24 | 171.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 27 | 171.91 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 7 |
| 28 | 171.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 33 | 172.16 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 34 | 172.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 67 | 174.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 76 | 174.33 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 86 | 174.33 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 102 | 174.50 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 103 | 174.53 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 104 | 174.59 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 122 | 174.97 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 2 |
| 136 | 175.31 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 15 |
| 152 | 175.48 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 154 | 175.49 | radiation | 10 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 167 | 175.81 | radiation | 10 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 173 | 175.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 176 | 176.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 188 | 176.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 232 | 176.35 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 15 |
| 238 | 176.37 | radiation | 1 | 720 | < th | dose independent | sin | 18 | NA |
| 263 | 176.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 265 | 176.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 324 | 176.91 | radiation | 1 | 720 | < th | dose dependent | sin | 18 | NA |
| 325 | 176.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 364 | 177.21 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 368 | 177.24 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 399 | 177.62 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 410 | 177.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 412 | 177.73 | radiation | 1 | 720 | < th | dose dependent | sin | 1 | NA |
| 434 | 177.80 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 12 |
| 467 | 177.89 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 487 | 178.00 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 9 |
| 575 | 178.71 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 656 | 179.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 675 | 179.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 680 | 179.33 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 681 | 179.34 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 697 | 179.42 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 702 | 179.45 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 709 | 179.49 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 714 | 179.53 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 723 | 179.59 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 754 | 179.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 761 | 179.79 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 778 | 179.89 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 784 | 179.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 785 | 179.94 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 18 |
| 791 | 179.97 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 803 | 180.04 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 21 |
| 810 | 180.06 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 816 | 180.09 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 19 |
| 828 | 180.14 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 16 |
| 871 | 180.25 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 888 | 180.26 | humidity | 90 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 895 | 180.28 | humidity | 80 | 720 | < th | dose dependent | sin | 13 | NA |
| 897 | 180.31 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 16 |