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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0522400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, SWIM-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0167) R2 : 0.00168
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0309 (0.0352) R2dN8 : 0.00217 R2N8 : 0.00168
σ : 0.315
deviance : 45.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.83 0.307 2.99 0.102 0.00916 -0.727 0.215 -0.638 0.0662 11.3 74.86 4322 -- --
42.84 0.305 2.98 0.0717 0.0104 -0.446 0.209 -- 0.0659 11.4 72.49 4431 -- --
43.03 0.306 2.99 0.109 0.00825 -0.708 -- -0.587 0.0673 12.4 74.19 5038 -- --
43.03 0.306 2.98 0.0817 0.0094 -0.45 -- -- 0.0671 11.7 72.4 4319 -- --
43.03 0.306 2.98 0.0991 -- -0.612 -- -0.367 0.0673 -- 73.3 4567 -- --
45.18 0.315 2.99 -0.0954 0.0104 -- 0.234 -- 0.0205 11.3 -- -- -- --
45.42 0.316 2.99 -0.0859 0.00943 -- -- -- 0.0214 12 -- -- -- --
43.04 0.306 2.98 0.0815 -- -0.45 -- -- 0.067 -- 73.86 4644 -- --
43.17 0.306 2.98 -- 0.00888 -0.398 -- -- 0.055 11 72.74 4504 -- --
45.42 0.315 2.99 -0.0862 -- -- -- -- 0.0213 -- -- -- -- --
45.61 0.316 2.99 -- 0.0106 -- -- -- 0.031 12.4 -- -- -- --
43.17 0.306 2.98 -- -- -0.398 -- -- 0.0548 -- 74.59 4666 -- --
45.62 0.315 2.99 -- -- -- -- -- 0.0309 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.83 humidity 80 90 < th dose independent rect. 1 3
5 36.83 humidity 80 90 < th dose dependent rect. 1 3
17 37.35 humidity 90 10 < th dose dependent rect. 2 2
18 38.04 humidity 90 10 < th dose independent rect. 2 2
59 40.88 atmosphere 1005 10 > th dose dependent rect. 3 1
67 41.34 temperature 20 10 < th dose dependent rect. 2 2
72 41.42 temperature 20 90 < th dose independent rect. 1 3
102 41.82 temperature 20 270 < th dose independent rect. 24 1
112 41.89 wind 9 10 > th dose independent rect. 18 1
116 41.89 wind 9 10 > th dose dependent rect. 18 1
122 41.92 radiation 1 30 > th dose dependent rect. 18 1
152 41.97 temperature 20 90 < th dose independent rect. 2 1
154 42.01 wind 9 10 > th dose dependent rect. 18 4
233 42.24 temperature 10 30 > th dose dependent rect. 23 23
236 42.29 humidity 80 1440 > th dose independent rect. 24 2
241 42.33 radiation 40 4320 < th dose independent rect. 15 12
250 42.36 radiation 40 4320 < th dose independent rect. 15 10
255 42.36 temperature 20 10 < th dose dependent rect. 1 9
257 42.38 humidity 50 43200 > th dose independent rect. 4 2
261 42.39 wind 9 720 > th dose dependent rect. 18 1
272 42.43 radiation 40 4320 < th dose independent rect. 15 1
278 42.47 radiation 40 4320 < th dose independent rect. 15 5
312 42.53 radiation 40 4320 < th dose independent rect. 15 16
370 42.58 radiation 20 720 > th dose independent rect. 16 1
401 42.63 humidity 50 43200 < th dose independent rect. 4 1
406 42.64 wind 9 90 > th dose independent rect. 18 3
407 42.64 wind 9 10 > th dose independent rect. 18 4
429 42.66 humidity 70 43200 < th dose dependent rect. 5 1
478 42.75 radiation 30 4320 > th dose dependent rect. 15 17
479 42.76 wind 9 14400 < th dose independent rect. 23 1
491 42.77 wind 9 720 > th dose independent rect. 18 1
515 42.80 humidity 50 43200 < th dose independent rect. 21 10
516 42.80 temperature 20 90 < th dose independent rect. 24 16
517 42.80 radiation 20 4320 > th dose dependent rect. 7 1
521 42.81 radiation 20 720 > th dose dependent rect. 16 1
538 42.82 radiation 1 720 > th dose dependent rect. 16 1
542 42.83 radiation 30 4320 > th dose independent rect. 7 1
584 42.86 humidity 50 43200 > th dose independent rect. 1 5
586 42.86 humidity 50 43200 > th dose independent rect. 21 10
587 42.86 temperature 20 90 < th dose independent rect. 24 11
589 42.87 radiation 1 30 > th dose independent rect. 18 1
643 42.90 radiation 10 4320 < th dose independent rect. 18 9
647 42.91 wind 5 43200 > th dose dependent rect. 6 1
648 42.91 radiation 1 1440 < th dose dependent rect. 6 1
655 42.92 temperature 20 90 < th dose independent rect. 24 9
662 42.92 wind 5 43200 > th dose dependent rect. 4 4
668 42.93 wind 5 43200 > th dose independent rect. 6 1
669 42.93 wind 5 43200 < th dose independent rect. 6 1
670 42.93 temperature 10 43200 > th dose independent rect. 20 1
741 42.96 wind 5 43200 > th dose independent rect. 4 3
743 42.96 wind 5 43200 < th dose independent rect. 4 3
752 42.96 wind 9 43200 < th dose dependent rect. 7 3
757 42.96 wind 9 43200 < th dose dependent rect. 6 5
762 42.96 wind 9 43200 < th dose dependent rect. 4 6
767 42.97 wind 5 43200 < th dose independent rect. 9 1
770 42.97 humidity 50 43200 < th dose independent rect. 19 12
782 42.97 wind 1 43200 > th dose dependent rect. 2 8
793 42.98 temperature 10 43200 > th dose independent rect. 13 8
797 42.98 temperature 20 90 < th dose independent rect. 24 20
833 42.99 radiation 10 43200 < th dose dependent rect. 23 1
850 42.99 wind 9 43200 < th dose dependent rect. 2 9
852 42.99 temperature 25 10 < th dose dependent rect. 1 19
855 43.00 wind 5 43200 > th dose independent rect. 9 1
870 43.00 radiation 10 4320 < th dose independent rect. 18 7
874 43.00 wind 3 43200 < th dose independent rect. 2 10
911 43.01 radiation 30 4320 < th dose independent rect. 6 3
923 43.01 radiation 30 4320 < th dose independent rect. 24 9
937 43.01 humidity 80 720 < th dose dependent rect. 16 1