Os05g0521700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0521700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 410.48 | 0.952 | 3.89 | -0.228 | 0.865 | 0.205 | -1.95 | 11.7 | -0.615 | 8.96 | 30 | 1274 | -- | -- |
| 423.79 | 0.959 | 4.13 | -2.19 | 0.846 | 1.38 | -1.78 | -- | -0.702 | 8.25 | 30.69 | 5537 | -- | -- |
| 421.48 | 0.956 | 3.89 | -0.258 | 0.922 | 0.156 | -- | 12.2 | -0.627 | 8.26 | 30 | 1220 | -- | -- |
| 431.95 | 0.968 | 4.14 | -2.33 | 0.869 | 1.46 | -- | -- | -0.679 | 7.94 | 30.71 | 5553 | -- | -- |
| 466.16 | 1.01 | 3.87 | 0.102 | -- | -0.0916 | -- | 13.8 | -0.62 | -- | 30.18 | 1328 | -- | -- |
| 532.97 | 1.08 | 4.19 | -1.85 | 0.854 | -- | -1.9 | -- | -0.923 | 8.4 | -- | -- | -- | -- |
| 540.19 | 1.09 | 4.2 | -1.92 | 0.922 | -- | -- | -- | -0.929 | 7.28 | -- | -- | -- | -- |
| 470.72 | 1.01 | 4.16 | -2.39 | -- | 1.47 | -- | -- | -0.716 | -- | 29.15 | 5688 | -- | -- |
| 573.33 | 1.12 | 4.09 | -- | 0.905 | 1.36 | -- | -- | -0.45 | 7.95 | 31.73 | 4103 | -- | -- |
| 585.31 | 1.13 | 4.22 | -1.9 | -- | -- | -- | -- | -0.914 | -- | -- | -- | -- | -- |
| 637.28 | 1.18 | 4.15 | -- | 0.904 | -- | -- | -- | -0.716 | 7.42 | -- | -- | -- | -- |
| 609.77 | 1.15 | 4.12 | -- | -- | 1.13 | -- | -- | -0.486 | -- | 30.5 | 5656 | -- | -- |
| 680.86 | 1.22 | 4.17 | -- | -- | -- | -- | -- | -0.703 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 404.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 5 | 408.23 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 6 | 409.51 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 13 | 410.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 14 | 410.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 28 | 411.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 37 | 412.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 42 | 412.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 46 | 412.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 62 | 412.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 81 | 413.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 84 | 413.32 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 85 | 413.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 87 | 413.40 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 91 | 413.52 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 123 | 413.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 132 | 413.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 149 | 413.85 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 150 | 413.86 | temperature | 30 | 1440 | > th | dose dependent | sin | 20 | NA |
| 155 | 413.90 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 178 | 414.02 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 374 | 414.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 434 | 415.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 447 | 415.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 509 | 416.00 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 514 | 416.09 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 549 | 416.50 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 591 | 416.83 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 616 | 417.15 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 667 | 417.49 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 691 | 417.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 758 | 417.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 764 | 417.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 775 | 418.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 783 | 418.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 791 | 418.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 797 | 418.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 875 | 418.50 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 974 | 418.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |