Os05g0521600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os05g0521600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 322.9 | 0.844 | 5.65 | -3.69 | 3.78 | -3.76 | 0.981 | -3.06 | -0.788 | 2.99 | 23.31 | 10 | -- | -- |
| 335.13 | 0.859 | 5.7 | -4.04 | 3.74 | -3.31 | 0.0401 | -- | -0.862 | 3.03 | 23.46 | 22 | -- | -- |
| 325.15 | 0.84 | 5.66 | -3.77 | 3.77 | -3.73 | -- | -2.52 | -0.795 | 3.02 | 23.18 | 10 | -- | -- |
| 334.79 | 0.852 | 5.7 | -3.95 | 3.77 | -3.36 | -- | -- | -0.85 | 3 | 23.49 | 10 | -- | -- |
| 1071.38 | 1.53 | 5.61 | -3.41 | -- | -1.37 | -- | -0.458 | -0.463 | -- | 23.18 | 10 | -- | -- |
| 480.12 | 1.03 | 5.58 | -3.34 | 3.31 | -- | 0.0276 | -- | -0.384 | 3.37 | -- | -- | -- | -- |
| 480.13 | 1.03 | 5.58 | -3.34 | 3.31 | -- | -- | -- | -0.384 | 3.37 | -- | -- | -- | -- |
| 1070.32 | 1.52 | 5.61 | -3.46 | -- | -1.39 | -- | -- | -0.467 | -- | 23 | 40 | -- | -- |
| 729.54 | 1.26 | 5.55 | -- | 3.45 | -1.79 | -- | -- | -0.214 | 3.18 | 23.19 | 3 | -- | -- |
| 1096.23 | 1.55 | 5.58 | -3.2 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 773.55 | 1.3 | 5.5 | -- | 3.24 | -- | -- | -- | -0.0127 | 3.37 | -- | -- | -- | -- |
| 1362.17 | 1.72 | 5.5 | -- | -- | 1.35 | -- | -- | 0.0652 | -- | 14.41 | 8 | -- | -- |
| 1365.78 | 1.72 | 5.5 | -- | -- | -- | -- | -- | 0.0577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 309.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 13 | 313.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 17 | 314.34 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 40 | 320.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 44 | 320.99 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 53 | 322.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 89 | 326.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 122 | 330.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 125 | 330.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 143 | 331.51 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 147 | 331.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 154 | 331.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 155 | 331.97 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 156 | 332.02 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 165 | 332.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 170 | 332.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 175 | 332.76 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 185 | 333.20 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 199 | 333.88 | temperature | 25 | 10 | < th | dose dependent | sin | 9 | NA |
| 207 | 334.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 238 | 334.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 265 | 335.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 281 | 335.86 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 315 | 336.79 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 488 | 341.59 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 23 |
| 543 | 343.33 | temperature | 10 | 10 | > th | dose dependent | sin | 9 | NA |
| 604 | 345.58 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 13 |
| 620 | 345.99 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 643 | 346.57 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 759 | 349.74 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 792 | 350.66 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 22 |
| 821 | 351.56 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 857 | 352.41 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 22 |
| 859 | 352.49 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 878 | 353.00 | temperature | 20 | 30 | < th | dose independent | rect. | 16 | 22 |
| 891 | 353.24 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 908 | 353.57 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 911 | 353.63 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 920 | 353.77 | temperature | 20 | 30 | < th | dose independent | rect. | 13 | 23 |
| 925 | 353.87 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 926 | 353.91 | temperature | 20 | 30 | < th | dose independent | rect. | 11 | 23 |
| 928 | 353.92 | temperature | 20 | 30 | < th | dose independent | rect. | 19 | 23 |
| 929 | 353.92 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 23 |
| 931 | 353.94 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 932 | 353.94 | temperature | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 953 | 354.35 | temperature | 20 | 30 | > th | dose independent | sin | 10 | NA |
| 987 | 354.71 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 989 | 354.73 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 22 |