Os05g0519200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0519200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.62 | 0.314 | 11 | -0.526 | 1.68 | 0.889 | 0.0806 | 1.46 | -0.121 | 3.06 | 58.9 | 1040 | -- | -- |
| 47.62 | 0.321 | 11 | -0.399 | 1.68 | 0.981 | -0.233 | -- | -0.093 | 2.97 | 58.9 | 1020 | -- | -- |
| 44.63 | 0.311 | 11 | -0.522 | 1.69 | 0.887 | -- | 1.43 | -0.121 | 3.08 | 59.72 | 1050 | -- | -- |
| 47.74 | 0.322 | 11 | -0.373 | 1.7 | 0.937 | -- | -- | -0.0891 | 3.08 | 56.53 | 1053 | -- | -- |
| 93.83 | 0.454 | 11 | -0.406 | -- | 1.44 | -- | 0.159 | -0.0608 | -- | 59.72 | 1050 | -- | -- |
| 63.27 | 0.373 | 11 | -0.423 | 1.55 | -- | -0.152 | -- | -0.146 | 3.68 | -- | -- | -- | -- |
| 63.33 | 0.373 | 11 | -0.421 | 1.55 | -- | -- | -- | -0.145 | 3.69 | -- | -- | -- | -- |
| 93.91 | 0.453 | 11 | -0.402 | -- | 1.45 | -- | -- | -0.06 | -- | 59.72 | 1050 | -- | -- |
| 51.34 | 0.334 | 11 | -- | 1.7 | 1.03 | -- | -- | -0.0779 | 3.06 | 49 | 1048 | -- | -- |
| 197.15 | 0.656 | 11 | -0.356 | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
| 68.01 | 0.386 | 11 | -- | 1.55 | -- | -- | -- | -0.0981 | 3.69 | -- | -- | -- | -- |
| 98.16 | 0.463 | 11 | -- | -- | 1.44 | -- | -- | -0.0157 | -- | 59.72 | 1050 | -- | -- |
| 200.5 | 0.661 | 11 | -- | -- | -- | -- | -- | -0.0641 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.61 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 2 | 44.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 7 | 45.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 15 |
| 23 | 45.19 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 29 | 45.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 30 | 45.23 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 34 | 45.28 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 57 | 45.42 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 71 | 45.48 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 17 |
| 77 | 45.51 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 21 |
| 90 | 45.54 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 94 | 45.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 95 | 45.56 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 104 | 45.59 | temperature | 25 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 110 | 45.60 | temperature | 30 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 138 | 45.64 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 159 | 45.67 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 160 | 45.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 209 | 45.72 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 220 | 45.72 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 280 | 45.75 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 286 | 45.76 | temperature | 20 | 14400 | > th | dose dependent | sin | 8 | NA |
| 403 | 45.79 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 21 |
| 451 | 45.80 | temperature | 20 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 456 | 45.81 | temperature | 25 | 14400 | > th | dose independent | sin | 18 | NA |
| 457 | 45.81 | temperature | 25 | 14400 | < th | dose independent | sin | 18 | NA |
| 467 | 45.81 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 468 | 45.81 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 651 | 45.85 | temperature | 25 | 14400 | > th | dose dependent | sin | 23 | NA |
| 704 | 45.86 | temperature | 25 | 14400 | > th | dose dependent | sin | 21 | NA |
| 834 | 45.89 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 9 |
| 943 | 45.92 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 987 | 45.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 18 |