Os05g0517800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0517800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.17 | 0.294 | 10.3 | 0.384 | 0.52 | 0.646 | 0.306 | 0.206 | 0.262 | 17.9 | 20.8 | 1176 | -- | -- |
| 39.22 | 0.292 | 10.4 | 0.36 | 0.51 | 0.602 | 0.28 | -- | 0.26 | 17.8 | 20.95 | 1087 | -- | -- |
| 39.37 | 0.292 | 10.4 | 0.385 | 0.526 | 0.64 | -- | 0.186 | 0.261 | 17.9 | 20.9 | 1175 | -- | -- |
| 39.43 | 0.292 | 10.4 | 0.349 | 0.513 | 0.606 | -- | -- | 0.254 | 17.8 | 20.9 | 1087 | -- | -- |
| 51.61 | 0.335 | 10.3 | 0.386 | -- | 0.608 | -- | 0.118 | 0.255 | -- | 20.92 | 733 | -- | -- |
| 49.55 | 0.33 | 10.3 | 0.602 | 0.513 | -- | 0.387 | -- | 0.407 | 18.3 | -- | -- | -- | -- |
| 49.92 | 0.331 | 10.3 | 0.597 | 0.514 | -- | -- | -- | 0.408 | 18.3 | -- | -- | -- | -- |
| 51.65 | 0.335 | 10.3 | 0.36 | -- | 0.599 | -- | -- | 0.248 | -- | 20.93 | 726 | -- | -- |
| 42.02 | 0.302 | 10.4 | -- | 0.521 | 0.754 | -- | -- | 0.196 | 17.9 | 20.89 | 1193 | -- | -- |
| 63.66 | 0.373 | 10.3 | 0.583 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 59.3 | 0.36 | 10.3 | -- | 0.506 | -- | -- | -- | 0.342 | 18.4 | -- | -- | -- | -- |
| 54.72 | 0.345 | 10.4 | -- | -- | 0.688 | -- | -- | 0.191 | -- | 20.96 | 758 | -- | -- |
| 72.63 | 0.398 | 10.3 | -- | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.74 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 39.36 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 5 | 39.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 7 | 39.62 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 8 | 39.64 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 12 | 39.77 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 13 | 39.81 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 18 | 40.00 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 20 | 40.03 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 24 | 40.08 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 25 | 40.09 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 31 | 40.12 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 35 | 40.15 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 42 | 40.21 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 44 | 40.22 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 52 | 40.24 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 65 | 40.29 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 68 | 40.31 | temperature | 20.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 73 | 40.31 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 86 | 40.35 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 90 | 40.36 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 152 | 40.51 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 157 | 40.52 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 161 | 40.52 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 187 | 40.57 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 221 | 40.63 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 222 | 40.63 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 298 | 40.73 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 309 | 40.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 325 | 40.77 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 430 | 40.89 | temperature | 20.0 | 1440 | > th | dose independent | no | NA | NA |
| 439 | 40.89 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 453 | 40.91 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 481 | 40.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 514 | 40.97 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 536 | 41.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 604 | 41.06 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 611 | 41.06 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 619 | 41.07 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 621 | 41.08 | temperature | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 627 | 41.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 636 | 41.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 642 | 41.10 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 645 | 41.11 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 667 | 41.13 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 669 | 41.13 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 710 | 41.17 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 712 | 41.17 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 720 | 41.18 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 742 | 41.20 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 771 | 41.22 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 791 | 41.25 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 798 | 41.26 | temperature | 15.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 839 | 41.29 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 896 | 41.35 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 922 | 41.36 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 925 | 41.36 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |