Os05g0517500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).
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Os05g0517500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.11 | 0.298 | 12.1 | -1.17 | 0.728 | 0.709 | -0.37 | -0.762 | 0.103 | 18.3 | 25.86 | 1054 | -- | -- |
| 40.28 | 0.296 | 12.1 | -1.02 | 0.723 | 0.647 | -0.419 | -- | 0.116 | 18.3 | 25.4 | 1040 | -- | -- |
| 40.44 | 0.296 | 12.1 | -1.18 | 0.731 | 0.711 | -- | -0.813 | 0.096 | 18.3 | 25.8 | 1064 | -- | -- |
| 40.62 | 0.297 | 12.1 | -1.01 | 0.758 | 0.607 | -- | -- | 0.134 | 18.4 | 25.74 | 1101 | -- | -- |
| 53.25 | 0.34 | 12.2 | -1.4 | -- | 1.2 | -- | -2.09 | -0.0436 | -- | 24.1 | 577 | -- | -- |
| 52.5 | 0.34 | 12.1 | -0.845 | 0.789 | -- | -0.353 | -- | 0.172 | 19 | -- | -- | -- | -- |
| 52.83 | 0.34 | 12.1 | -0.839 | 0.787 | -- | -- | -- | 0.171 | 19 | -- | -- | -- | -- |
| 54.79 | 0.345 | 12.1 | -1.06 | -- | 1.04 | -- | -- | 0.0394 | -- | 23.8 | 562 | -- | -- |
| 65.8 | 0.378 | 12.1 | -- | 0.737 | 0.405 | -- | -- | 0.257 | 18.6 | 26.6 | 1074 | -- | -- |
| 85.44 | 0.432 | 12.1 | -0.855 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 71.37 | 0.395 | 12.1 | -- | 0.797 | -- | -- | -- | 0.265 | 18.9 | -- | -- | -- | -- |
| 83.22 | 0.425 | 12.1 | -- | -- | 0.851 | -- | -- | 0.184 | -- | 24.2 | 532 | -- | -- |
| 104.71 | 0.478 | 12.1 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 3 | 40.11 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 4 | 40.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 19 | 40.47 | temperature | 10 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 21 | 40.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 41 | 40.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 20 |
| 49 | 40.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 50 | 40.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 62 | 41.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 71 | 41.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 206 | 41.50 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 227 | 41.55 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 237 | 41.58 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 272 | 41.60 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 15 |
| 280 | 41.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 20 |
| 309 | 41.68 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 323 | 41.68 | radiation | 20 | 1440 | > th | dose independent | rect. | 13 | 19 |
| 357 | 41.75 | radiation | 30 | 270 | < th | dose dependent | rect. | 14 | 10 |
| 363 | 41.77 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 437 | 41.84 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 473 | 41.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 486 | 41.86 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 9 |
| 494 | 41.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 21 |
| 539 | 41.90 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 549 | 41.91 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 570 | 41.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 582 | 41.95 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 604 | 41.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 637 | 42.03 | radiation | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 662 | 42.05 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 667 | 42.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 687 | 42.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 688 | 42.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 698 | 42.12 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 720 | 42.14 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 4 |
| 729 | 42.16 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 766 | 42.19 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 771 | 42.19 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 795 | 42.21 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 817 | 42.23 | humidity | 70 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 856 | 42.26 | humidity | 60 | 1440 | < th | dose independent | sin | 13 | NA |
| 890 | 42.28 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 893 | 42.28 | radiation | 10 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 895 | 42.29 | humidity | 70 | 1440 | < th | dose dependent | sin | 13 | NA |
| 898 | 42.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 944 | 42.31 | radiation | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 945 | 42.31 | wind | 3 | 90 | < th | dose dependent | rect. | 1 | 4 |
| 946 | 42.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 4 |