FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0517400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0497) R2 : 0.205
β1 : -0.583 (0.183) R2dD : 0.0208 R2D : -0.0614
β2 : 0.529 (0.12) R2dC : 0.0439 R2C : 0.021
β3 : 4.76 (0.677) R2dE : 0.415 R2E : -0.241
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.5 (1.76) R2dD*E : 0.342 R2D*E : -0.373
γ1 : -0.497 (0.103) R2dN8 : 0.057 R2N8 : 0.0399
σ : 0.894
deviance : 368.17
__
_____
C
peak time of C : 22
E
wheather : wind
threshold : 1.084
memory length : 300
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.2
open length of G : 3.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
355.84 0.886 3.54 -0.693 0.53 5.3 -2.09 -10.8 -0.513 21.7 1 285 19.9 3.07
390.15 0.92 3.47 -0.496 0.566 2.82 -2.88 -- -0.511 20.7 0.9 242 20.4 4.7
368.17 0.894 3.55 -0.583 0.529 4.76 -- -11.5 -0.497 22 1.084 300 20.2 3.02
400.97 0.933 3.47 -0.351 0.685 1.18 -- -- -0.567 22.7 0.4 273 19.7 5.55
387.52 0.917 3.54 -0.604 -- 5.08 -- -11.4 -0.508 -- 1.064 300 20.3 2.78
392.69 0.929 3.48 -0.367 0.719 -- -1.72 -- -0.584 22.3 -- -- -- --
404.11 0.941 3.48 -0.302 0.728 -- -- -- -0.582 22.8 -- -- -- --
415.1 0.949 3.44 -0.374 -- 0.938 -- -- -0.544 -- 2.506 253 19.6 6.12
401.23 0.933 3.48 -- 0.702 1.06 -- -- -0.556 22.5 0.3998 490 19.8 5.62
436.89 0.977 3.46 -0.287 -- -- -- -- -0.578 -- -- -- -- --
406.52 0.943 3.47 -- 0.725 -- -- -- -0.548 22.8 -- -- -- --
418.22 0.952 3.45 -- -- 0.726 -- -- -0.533 -- 3.19 269 19.4 6.5
439.06 0.978 3.45 -- -- -- -- -- -0.546 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 360.27 wind 1 270 < th dose dependent rect. 15 8
2 360.39 wind 1 270 < th dose independent rect. 20 3
3 360.41 wind 1 270 < th dose dependent rect. 20 3
16 365.96 atmosphere 1010 720 < th dose dependent rect. 11 13
17 366.00 atmosphere 1010 720 < th dose dependent rect. 12 11
33 366.71 atmosphere 1010 720 < th dose dependent sin 18 NA
57 368.27 wind 7 1440 > th dose independent rect. 2 1
60 368.27 wind 7 1440 > th dose dependent rect. 2 1
70 368.38 atmosphere 1005 720 < th dose dependent rect. 18 3
79 368.54 atmosphere 1005 720 < th dose dependent rect. 18 1
82 368.63 wind 1 30 < th dose dependent rect. 21 5
83 368.63 atmosphere 1005 720 < th dose dependent rect. 18 5
116 369.20 atmosphere 1000 720 < th dose independent rect. 12 14
119 369.27 atmosphere 1000 720 < th dose independent rect. 13 12
122 369.30 wind 1 10 < th dose dependent rect. 24 2
148 369.57 atmosphere 1005 1440 < th dose dependent rect. 13 1
194 369.94 atmosphere 1000 1440 > th dose independent rect. 13 1
197 369.99 atmosphere 1010 1440 < th dose dependent rect. 11 3
201 370.06 atmosphere 1005 720 < th dose independent rect. 17 5
206 370.13 atmosphere 1000 720 > th dose independent rect. 15 2
252 370.54 atmosphere 1000 720 < th dose independent sin 16 NA
253 370.54 atmosphere 1000 10 < th dose independent rect. 20 20
286 370.77 atmosphere 1000 10 > th dose independent rect. 5 23
289 370.78 atmosphere 995 720 > th dose dependent rect. 11 10
294 370.80 atmosphere 995 720 > th dose dependent rect. 9 14
298 370.81 wind 7 1440 > th dose dependent rect. 2 6
312 370.89 atmosphere 995 720 > th dose dependent rect. 9 12
333 371.04 atmosphere 1015 10 < th dose dependent rect. 18 23
368 371.28 atmosphere 995 720 > th dose dependent sin 20 NA
382 371.39 atmosphere 1000 10 < th dose independent rect. 13 22
397 371.47 atmosphere 995 1440 > th dose dependent rect. 11 3
401 371.48 atmosphere 995 1440 > th dose dependent rect. 13 1
429 371.62 atmosphere 1000 1440 < th dose independent rect. 13 1
462 371.80 atmosphere 995 720 > th dose dependent rect. 13 8
503 371.98 wind 5 43200 < th dose independent rect. 8 1
531 372.14 atmosphere 1000 720 > th dose independent rect. 18 7
597 372.42 atmosphere 1005 720 < th dose independent rect. 19 2
623 372.55 wind 5 43200 > th dose independent rect. 8 1
754 373.09 atmosphere 1000 30 > th dose independent rect. 21 23
757 373.11 atmosphere 1000 10 < th dose independent rect. 13 18
784 373.19 atmosphere 1000 720 > th dose independent sin 20 NA
823 373.30 atmosphere 1010 1440 < th dose dependent sin 23 NA
830 373.33 atmosphere 1000 1440 < th dose independent rect. 11 5
875 373.45 atmosphere 1000 1440 > th dose independent rect. 9 9
883 373.46 radiation 10 1440 < th dose dependent rect. 9 8
886 373.47 radiation 10 1440 < th dose dependent rect. 14 3
902 373.51 atmosphere 1000 1440 < th dose independent rect. 11 7
920 373.56 atmosphere 1005 1440 < th dose independent rect. 10 2
944 373.61 atmosphere 1000 1440 < th dose independent rect. 9 9
945 373.61 atmosphere 1000 10 < th dose independent rect. 8 23
957 373.64 atmosphere 1005 270 < th dose dependent rect. 18 13
968 373.66 temperature 25 4320 > th dose dependent rect. 23 1
994 373.70 atmosphere 1005 1440 > th dose independent rect. 10 1