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Os05g0517200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HAD-superfamily hydrolase subfamily IIB protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0306) R2 : 0.686
β1 : -0.847 (0.112) R2dD : 0.0408 R2D : 0.0391
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.77 (0.0579) R2dE : 0.642 R2E : 0.632
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.184 (0.0653) R2dN8 : 0.00734 R2N8 : 0.0091
σ : 0.572
deviance : 150.98
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 8.03
memory length : 2
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.88 0.546 11.6 -0.819 0.799 1.37 1.06 -0.957 0.155 21.2 12.59 7 -- --
136.73 0.545 11.6 -0.837 0.847 1.31 0.0615 -- 0.153 21.4 12.59 6 -- --
136.29 0.544 11.6 -0.84 0.807 1.33 -- -0.319 0.156 21.3 12.64 6 -- --
136.73 0.545 11.6 -0.829 0.844 1.31 -- -- 0.158 21.4 12.44 6 -- --
150.66 0.572 11.5 -0.817 -- 1.77 -- -0.213 0.192 -- 8.03 2 -- --
164.98 0.602 11.6 -0.847 2.18 -- -0.078 -- 0.136 22.9 -- -- -- --
165 0.602 11.6 -0.844 2.18 -- -- -- 0.136 22.9 -- -- -- --
150.98 0.572 11.5 -0.847 -- 1.77 -- -- 0.184 -- 8.03 2 -- --
154.77 0.579 11.5 -- 0.845 1.32 -- -- 0.248 21.3 13.18 6 -- --
459.78 1 11.5 -0.797 -- -- -- -- 0.151 -- -- -- -- --
183.76 0.634 11.6 -- 2.17 -- -- -- 0.23 22.9 -- -- -- --
169.76 0.607 11.5 -- -- 1.76 -- -- 0.281 -- 7.591 2 -- --
476.52 1.02 11.5 -- -- -- -- -- 0.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.15 radiation 10.0 10 < th dose dependent sin 2 NA
3 128.73 wind 1.0 90 > th dose independent rect. 1 18
5 129.11 radiation 1.0 30 > th dose independent sin 1 NA
6 129.36 radiation 1.0 30 < th dose independent sin 1 NA
13 132.04 radiation 10.0 10 < th dose dependent rect. 1 19
18 132.28 radiation 10.0 10 < th dose dependent rect. 21 23
24 133.04 radiation 20.0 10 < th dose dependent rect. 13 20
53 135.31 wind 1.0 90 > th dose independent rect. 1 8
54 135.34 temperature 15.0 90 > th dose independent rect. 1 18
63 136.14 radiation 1.0 30 < th dose independent rect. 3 15
71 136.35 radiation 1.0 30 > th dose independent rect. 5 10
87 136.50 radiation 1.0 10 < th dose independent rect. 1 19
90 136.57 precipitation 0.1 270 < th dose independent rect. 16 23
91 136.57 precipitation 0.1 270 < th dose dependent rect. 16 23
92 136.60 radiation 1.0 10 < th dose independent rect. 3 17
114 137.32 temperature 15.0 270 > th dose independent rect. 23 19
115 137.34 radiation 10.0 43200 < th dose dependent rect. 21 5
142 137.67 radiation 20.0 10 < th dose independent rect. 1 19
153 137.94 radiation 20.0 10 < th dose dependent rect. 23 23
163 138.17 wind 9.0 90 < th dose independent rect. 1 18
169 138.25 humidity 80.0 270 > th dose independent rect. 23 9
172 138.27 humidity 60.0 270 > th dose independent rect. 17 7
175 138.30 wind 1.0 90 > th dose independent rect. 1 6
196 138.42 temperature 30.0 270 < th dose independent rect. 17 7
200 138.48 radiation 20.0 10 < th dose dependent rect. 15 23
206 138.59 radiation 20.0 10 < th dose dependent no NA NA
238 138.88 radiation 40.0 10 < th dose dependent rect. 13 7
239 138.90 radiation 30.0 10 < th dose dependent rect. 1 10
253 139.11 temperature 30.0 270 < th dose independent rect. 18 5
267 139.23 precipitation 0.1 90 < th dose independent rect. 19 6
268 139.23 precipitation 0.1 90 < th dose dependent rect. 19 6
277 139.30 radiation 10.0 270 < th dose independent rect. 17 7
278 139.31 precipitation 0.1 270 < th dose independent rect. 4 9
279 139.31 precipitation 0.1 270 < th dose dependent rect. 4 9
293 139.41 humidity 60.0 270 > th dose independent rect. 18 5
296 139.48 wind 9.0 90 < th dose independent rect. 19 6
297 139.48 temperature 10.0 90 > th dose dependent rect. 19 6
299 139.51 wind 9.0 270 < th dose independent rect. 23 19
300 139.52 temperature 10.0 90 > th dose independent rect. 19 6
304 139.52 atmosphere 995.0 90 > th dose independent rect. 19 6
305 139.52 radiation 1.0 90 < th dose independent rect. 19 6
311 139.52 atmosphere 1015.0 90 < th dose independent rect. 1 18
312 139.52 radiation 1.0 90 < th dose dependent rect. 19 6
324 139.59 temperature 10.0 10 > th dose dependent rect. 20 5
341 139.71 wind 7.0 270 < th dose independent rect. 17 7
343 139.72 wind 1.0 90 > th dose independent rect. 19 6
345 139.72 temperature 10.0 270 > th dose independent rect. 4 9
346 139.72 atmosphere 995.0 270 > th dose independent rect. 4 9
347 139.72 atmosphere 1015.0 270 < th dose independent rect. 4 9
348 139.72 temperature 10.0 270 > th dose independent rect. 13 15
353 139.78 wind 1.0 270 > th dose independent rect. 23 8
355 139.82 precipitation 0.1 270 < th dose independent rect. 17 7
356 139.82 precipitation 0.1 270 < th dose dependent rect. 17 7
357 139.83 radiation 20.0 10 < th dose independent rect. 12 8
374 139.85 radiation 40.0 90 < th dose dependent rect. 1 8
377 139.88 radiation 10.0 270 < th dose independent rect. 9 15
379 139.90 wind 1.0 270 > th dose independent rect. 17 7
388 139.96 radiation 1.0 270 < th dose independent rect. 23 19
390 139.97 humidity 50.0 270 > th dose independent rect. 4 9
392 139.98 wind 1.0 270 > th dose independent rect. 13 16
403 140.06 radiation 20.0 270 < th dose dependent rect. 17 7
416 140.15 radiation 10.0 10 < th dose dependent rect. 3 11
423 140.21 temperature 10.0 270 > th dose dependent rect. 19 4
433 140.24 precipitation 0.1 270 < th dose independent rect. 17 21
434 140.24 precipitation 0.1 270 < th dose dependent rect. 17 21
441 140.28 precipitation 0.1 10 < th dose independent rect. 20 19
443 140.28 precipitation 0.1 10 < th dose dependent rect. 20 19
444 140.29 atmosphere 1015.0 270 < th dose independent rect. 23 19
478 140.46 temperature 10.0 270 > th dose independent rect. 17 7
490 140.51 radiation 20.0 10 < th dose dependent rect. 1 23
493 140.55 atmosphere 995.0 90 > th dose independent rect. 1 18
497 140.60 precipitation 0.1 270 < th dose independent rect. 7 16
498 140.60 precipitation 0.1 270 < th dose dependent rect. 7 16
502 140.61 radiation 10.0 4320 < th dose dependent rect. 21 5
520 140.69 radiation 30.0 270 < th dose dependent rect. 23 8
534 140.75 atmosphere 995.0 270 > th dose independent rect. 17 7
559 140.90 precipitation 0.1 270 < th dose independent rect. 18 19
562 140.90 precipitation 0.1 270 < th dose dependent rect. 18 19
565 140.93 wind 9.0 270 < th dose independent rect. 13 15
570 140.98 radiation 20.0 270 < th dose independent rect. 23 8
618 141.07 radiation 20.0 90 < th dose independent rect. 1 8
628 141.14 precipitation 0.1 90 < th dose independent rect. 1 18
630 141.14 precipitation 0.1 90 < th dose dependent rect. 1 18
659 141.24 atmosphere 995.0 270 > th dose independent rect. 13 15
663 141.26 atmosphere 1015.0 270 < th dose independent rect. 23 8
664 141.28 atmosphere 995.0 270 > th dose independent rect. 23 19
665 141.29 temperature 10.0 270 > th dose independent rect. 23 8
666 141.29 temperature 30.0 270 < th dose independent rect. 23 8
667 141.29 humidity 50.0 270 > th dose independent rect. 23 8
669 141.29 atmosphere 995.0 270 > th dose independent rect. 23 8
671 141.29 temperature 10.0 270 > th dose independent rect. 7 16
674 141.31 wind 9.0 270 < th dose independent rect. 23 8
682 141.37 temperature 10.0 270 > th dose dependent rect. 20 1
687 141.41 wind 9.0 10 < th dose independent rect. 1 19
692 141.43 humidity 50.0 270 > th dose independent rect. 7 16
702 141.48 radiation 10.0 10 < th dose dependent rect. 6 14
718 141.55 wind 9.0 90 < th dose dependent rect. 19 6
720 141.56 wind 9.0 270 < th dose dependent rect. 17 6
733 141.62 humidity 80.0 10 > th dose independent rect. 1 9
777 141.79 radiation 1.0 270 < th dose independent rect. 23 9
799 141.85 radiation 10.0 270 < th dose dependent rect. 8 16
804 141.87 precipitation 0.1 270 < th dose independent rect. 19 16
805 141.87 precipitation 0.1 270 < th dose independent rect. 23 19
807 141.87 precipitation 0.1 270 < th dose dependent rect. 19 16
808 141.87 precipitation 0.1 270 < th dose dependent rect. 23 19
810 141.88 precipitation 0.1 10 < th dose independent rect. 20 5
811 141.88 precipitation 0.1 270 < th dose independent rect. 13 15
812 141.88 precipitation 0.1 10 < th dose dependent rect. 20 5
814 141.88 precipitation 0.1 270 < th dose dependent rect. 13 15
822 141.93 wind 9.0 10 < th dose independent rect. 20 5
827 141.95 humidity 80.0 10 > th dose independent rect. 1 15
830 141.96 humidity 50.0 90 > th dose dependent rect. 1 8
831 141.97 temperature 10.0 10 > th dose independent rect. 20 5
832 141.97 temperature 30.0 10 < th dose independent rect. 20 5
833 141.97 humidity 50.0 10 > th dose independent rect. 20 5
836 141.97 atmosphere 995.0 10 > th dose independent rect. 20 5
837 141.97 radiation 1.0 10 < th dose independent rect. 20 5
842 141.97 temperature 10.0 10 > th dose independent rect. 1 19
844 141.97 atmosphere 1015.0 10 < th dose independent rect. 1 19
845 141.97 radiation 1.0 10 < th dose dependent rect. 20 5
912 142.16 wind 9.0 270 < th dose independent rect. 4 9
958 142.26 radiation 10.0 4320 < th dose dependent rect. 21 7
965 142.29 wind 9.0 270 < th dose independent rect. 7 16
977 142.32 temperature 10.0 1440 > th dose independent rect. 21 5
980 142.32 temperature 30.0 1440 < th dose independent rect. 21 5
984 142.32 humidity 50.0 1440 > th dose independent rect. 21 5
990 142.32 atmosphere 995.0 1440 > th dose independent rect. 21 5
991 142.32 radiation 1.0 1440 < th dose independent rect. 21 5