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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0516700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.0541) R2 : 0.465
β1 : -3.15 (0.258) R2dD : 0.313 R2D : 0.208
β2 : 1.4 (0.127) R2dC : 0.142 R2C : 0.128
β3 : 2.43 (0.259) R2dE : 0.114 R2E : 0.134
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.86 (1.14) R2dD*E : 0.0402 R2D*E : -0.151
γ1 : -0.322 (0.115) R2dN8 : 0.0124 R2N8 : -0.0161
σ : 1
deviance : 464.56
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_____
C
peak time of C : 0.0705
E
wheather : radiation
threshold : 1
memory length : 4180
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 12

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
464.44 1.01 5.82 -3.15 1.4 2.43 0.169 -4.87 -0.322 0.0767 1 4181 18.1 12
481.9 1.02 5.82 -2.45 1.41 2.37 0.23 -- -0.267 24 0.9451 4158 18.1 12
464.56 1 5.82 -3.15 1.4 2.43 -- -4.86 -0.322 0.0705 1 4180 18.1 12
480.43 1.02 5.86 -2.5 1.4 2.32 -- -- -0.304 24 0.8999 4179 18.1 11.9
581.75 1.12 5.81 -3.18 -- 2.47 -- -4.62 -0.353 -- 1.06 4317 18.1 12.1
557.28 1.11 5.84 -2.73 1.37 -- 0.219 -- -0.209 23.8 -- -- -- --
557.49 1.11 5.84 -2.74 1.37 -- -- -- -0.21 23.8 -- -- -- --
595.7 1.14 5.84 -2.51 -- 2.26 -- -- -0.29 -- 0.91 4333 18.2 12
548.26 1.09 5.88 -- 1.47 2.75 -- -- -0.0462 23.6 1.771 5607 17.8 11.5
675.85 1.21 5.81 -2.69 -- -- -- -- -0.192 -- -- -- -- --
754.75 1.29 5.77 -- 1.34 -- -- -- 0.0947 23.7 -- -- -- --
614.19 1.15 5.88 -- -- 2.78 -- -- -0.105 -- 1.572 25003 17.9 11.4
867.43 1.37 5.74 -- -- -- -- -- 0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 470.46 radiation 1 4320 > th dose independent rect. 18 12
3 472.10 radiation 1 4320 < th dose independent rect. 18 12
5 473.23 radiation 1 4320 > th dose independent rect. 18 16
6 474.93 radiation 1 4320 < th dose independent rect. 18 16
12 478.47 radiation 1 4320 > th dose independent sin 11 NA
17 479.29 radiation 1 4320 < th dose independent sin 10 NA
22 480.79 wind 9 270 > th dose dependent sin 10 NA
23 480.86 wind 9 270 > th dose independent sin 10 NA
27 481.91 radiation 1 4320 < th dose independent rect. 5 5
28 481.91 radiation 1 4320 > th dose independent rect. 16 18
30 482.14 radiation 1 4320 > th dose independent rect. 5 5
32 482.46 wind 9 720 > th dose dependent rect. 20 21
36 482.87 radiation 1 4320 < th dose dependent rect. 3 3
38 482.89 radiation 1 4320 < th dose dependent rect. 1 5
42 483.05 radiation 1 4320 < th dose independent rect. 1 9
43 483.07 radiation 1 4320 < th dose independent rect. 3 7
44 483.08 radiation 1 4320 < th dose independent rect. 16 18
47 483.09 radiation 1 4320 < th dose dependent rect. 22 8
50 483.13 radiation 1 4320 < th dose dependent rect. 19 11
51 483.14 radiation 1 4320 < th dose independent rect. 22 12
58 483.30 wind 9 720 > th dose independent rect. 19 22
59 483.30 radiation 1 4320 > th dose independent rect. 18 23
66 483.57 radiation 1 4320 > th dose independent rect. 16 15
68 483.62 wind 9 720 > th dose dependent rect. 11 6
90 484.15 radiation 1 4320 < th dose independent rect. 18 23
97 484.56 wind 9 720 > th dose dependent rect. 1 16
105 484.67 wind 9 720 > th dose dependent rect. 11 15
118 484.79 wind 9 720 > th dose dependent rect. 11 12
139 484.93 radiation 1 4320 < th dose independent rect. 16 15
145 485.22 radiation 1 4320 < th dose independent rect. 5 2
165 485.54 wind 9 720 > th dose independent rect. 10 7
166 485.62 radiation 1 4320 > th dose independent rect. 5 2
172 485.73 wind 9 720 > th dose independent rect. 1 16
175 485.74 wind 9 720 > th dose dependent rect. 15 1
178 485.81 wind 9 720 > th dose independent rect. 10 16
191 485.99 wind 9 720 > th dose independent rect. 10 13
198 486.09 wind 9 720 > th dose independent rect. 15 22
240 486.50 wind 9 720 > th dose independent no NA NA
256 486.50 wind 9 720 > th dose independent rect. 1 22
291 486.61 wind 9 720 < th dose independent no NA NA
292 486.63 wind 9 14400 > th dose independent rect. 9 1
301 486.66 radiation 1 4320 < th dose dependent rect. 3 7
302 486.66 radiation 1 4320 < th dose dependent rect. 1 9
341 486.78 radiation 1 4320 < th dose dependent rect. 22 12
342 486.80 radiation 1 4320 < th dose dependent rect. 19 15
348 486.90 radiation 1 4320 < th dose independent rect. 1 6
349 486.91 wind 5 90 > th dose dependent sin 11 NA
350 486.93 radiation 1 4320 < th dose independent rect. 3 4
351 486.94 wind 9 720 > th dose independent sin 22 NA
363 487.01 wind 9 720 < th dose independent sin 22 NA
365 487.02 radiation 1 4320 < th dose independent rect. 22 9
393 487.22 humidity 90 14400 > th dose independent rect. 5 1
395 487.22 wind 9 720 > th dose dependent sin 20 NA
400 487.31 wind 7 270 > th dose dependent sin 15 NA
412 487.38 wind 9 270 < th dose independent sin 10 NA
444 487.70 wind 9 720 > th dose dependent no NA NA
464 487.70 wind 9 720 > th dose dependent rect. 1 22
481 487.72 radiation 1 4320 < th dose independent rect. 5 12
490 487.79 radiation 1 4320 > th dose independent rect. 5 12
522 487.86 wind 9 720 > th dose dependent rect. 15 23
534 487.88 radiation 1 4320 < th dose independent rect. 1 16
537 487.89 radiation 1 4320 < th dose independent rect. 3 14
542 487.92 radiation 1 4320 < th dose independent rect. 22 19
629 488.26 radiation 1 4320 < th dose dependent sin 9 NA
685 488.49 wind 9 720 > th dose independent rect. 18 19
703 488.72 radiation 1 4320 > th dose independent rect. 8 23
760 488.86 wind 9 720 > th dose independent rect. 15 1
866 489.34 radiation 1 4320 > th dose independent no NA NA
949 489.52 radiation 1 4320 < th dose independent rect. 8 23
964 489.71 wind 9 720 > th dose independent sin 8 NA
970 489.79 wind 9 720 > th dose dependent rect. 18 19
995 490.06 radiation 1 4320 < th dose independent rect. 1 19
998 490.07 radiation 1 4320 < th dose independent rect. 5 15