Os05g0516400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
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Os05g0516400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.44 | 0.586 | 3.83 | -0.518 | 1.08 | 0.739 | -0.129 | 0.156 | -0.179 | 1.11 | 20.6 | 630 | -- | -- |
| 155.51 | 0.581 | 3.83 | -0.546 | 1.08 | 0.724 | -0.103 | -- | -0.183 | 1.1 | 20.6 | 623 | -- | -- |
| 155.5 | 0.581 | 3.82 | -0.516 | 1.08 | 0.742 | -- | 0.14 | -0.18 | 1.12 | 20.6 | 630 | -- | -- |
| 155.55 | 0.581 | 3.83 | -0.545 | 1.08 | 0.727 | -- | -- | -0.186 | 1.12 | 20.61 | 626 | -- | -- |
| 222.38 | 0.695 | 3.82 | -0.568 | -- | 0.986 | -- | 0.233 | -0.221 | -- | 20.7 | 821 | -- | -- |
| 171.56 | 0.614 | 3.8 | -0.294 | 1.13 | -- | -0.199 | -- | -0.0209 | 0.767 | -- | -- | -- | -- |
| 171.73 | 0.614 | 3.79 | -0.287 | 1.13 | -- | -- | -- | -0.02 | 0.784 | -- | -- | -- | -- |
| 222.52 | 0.695 | 3.83 | -0.615 | -- | 0.967 | -- | -- | -0.229 | -- | 20.77 | 812 | -- | -- |
| 162.64 | 0.594 | 3.81 | -- | 1.07 | 0.592 | -- | -- | -0.0997 | 0.955 | 20.7 | 618 | -- | -- |
| 251.6 | 0.741 | 3.78 | -0.246 | -- | -- | -- | -- | 0.000629 | -- | -- | -- | -- | -- |
| 173.9 | 0.617 | 3.79 | -- | 1.13 | -- | -- | -- | 0.0119 | 0.772 | -- | -- | -- | -- |
| 231.2 | 0.708 | 3.81 | -- | -- | 0.75 | -- | -- | -0.147 | -- | 21.3 | 840 | -- | -- |
| 253.19 | 0.743 | 3.77 | -- | -- | -- | -- | -- | 0.0279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 3 | 153.64 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 21 |
| 5 | 153.87 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 9 | 154.44 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 13 |
| 13 | 154.67 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 16 | 154.92 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 19 |
| 22 | 155.10 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 17 |
| 39 | 155.46 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 16 |
| 59 | 155.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 8 |
| 60 | 155.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 62 | 155.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 18 |
| 63 | 155.85 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 11 |
| 65 | 155.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 74 | 155.96 | temperature | 20.0 | 720 | > th | dose independent | sin | 12 | NA |
| 81 | 156.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 115 | 156.31 | temperature | 20.0 | 720 | < th | dose independent | sin | 11 | NA |
| 132 | 156.42 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 159 | 156.53 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 183 | 156.65 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 186 | 156.66 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 15 |
| 245 | 156.90 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 21 |
| 251 | 156.92 | wind | 9.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 261 | 156.95 | temperature | 25.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 270 | 156.97 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 294 | 157.08 | wind | 7.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 326 | 157.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 358 | 157.23 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 376 | 157.29 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 1 |
| 379 | 157.29 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 381 | 157.31 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 19 |
| 389 | 157.34 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 393 | 157.35 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 396 | 157.36 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 418 | 157.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 451 | 157.48 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 23 |
| 466 | 157.53 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 475 | 157.54 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 488 | 157.59 | wind | 9.0 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 503 | 157.62 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 23 |
| 514 | 157.65 | temperature | 20.0 | 720 | < th | dose independent | no | NA | NA |
| 520 | 157.66 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 522 | 157.66 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 527 | 157.67 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 7 |
| 539 | 157.70 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 5 |
| 546 | 157.71 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 7 |
| 587 | 157.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 590 | 157.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 633 | 157.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 23 |
| 634 | 157.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 645 | 157.92 | wind | 5.0 | 270 | > th | dose independent | rect. | 17 | 1 |
| 658 | 157.94 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 15 | 5 |
| 680 | 157.98 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 699 | 158.03 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 2 |
| 714 | 158.06 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 21 |
| 716 | 158.07 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 9 |
| 736 | 158.10 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 17 | 4 |
| 775 | 158.18 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 798 | 158.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 23 |
| 808 | 158.25 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 863 | 158.34 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 873 | 158.36 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 915 | 158.43 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 5 |
| 938 | 158.45 | radiation | 1.0 | 30 | < th | dose independent | rect. | 7 | 13 |