Os05g0516300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0516300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.28 | 0.291 | 12.9 | -0.958 | 1.42 | 0.531 | 0.116 | 1.1 | -0.159 | 23.9 | 62.23 | 5596 | -- | -- |
| 40.11 | 0.295 | 12.9 | -0.97 | 1.42 | 0.552 | 0.0666 | -- | -0.172 | 23.9 | 62 | 5595 | -- | -- |
| 38.33 | 0.288 | 12.9 | -0.961 | 1.42 | 0.528 | -- | 1.1 | -0.158 | 23.9 | 62.23 | 5595 | -- | -- |
| 40.12 | 0.295 | 12.9 | -0.999 | 1.42 | 0.56 | -- | -- | -0.186 | 23.9 | 63.11 | 5595 | -- | -- |
| 145.63 | 0.565 | 12.9 | -0.922 | -- | 0.72 | -- | -0.00562 | -0.2 | -- | 62.23 | 5595 | -- | -- |
| 45 | 0.315 | 12.9 | -0.955 | 1.4 | -- | 0.0306 | -- | -0.114 | 23.9 | -- | -- | -- | -- |
| 45.01 | 0.314 | 12.9 | -0.957 | 1.4 | -- | -- | -- | -0.114 | 23.9 | -- | -- | -- | -- |
| 113.6 | 0.499 | 12.9 | -0.876 | -- | 0.761 | -- | -- | -0.154 | -- | 71 | 1623 | -- | -- |
| 51.51 | 0.334 | 12.9 | -- | 1.42 | 0.829 | -- | -- | -0.119 | 23.9 | 50 | 4298 | -- | -- |
| 167.73 | 0.605 | 12.9 | -0.915 | -- | -- | -- | -- | -0.0953 | -- | -- | -- | -- | -- |
| 69.12 | 0.389 | 12.9 | -- | 1.38 | -- | -- | -- | -0.00712 | 23.8 | -- | -- | -- | -- |
| 131.01 | 0.535 | 12.9 | -- | -- | 0.768 | -- | -- | -0.0098 | -- | 72 | 1620 | -- | -- |
| 189.79 | 0.643 | 12.9 | -- | -- | -- | -- | -- | 0.00613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.91 | humidity | 50 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 2 | 37.19 | humidity | 70 | 90 | > th | dose independent | rect. | 9 | 20 |
| 3 | 37.30 | humidity | 50 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 7 | 37.43 | humidity | 50 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 11 | 37.57 | radiation | 1 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 14 | 37.76 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 18 |
| 15 | 37.77 | humidity | 70 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 18 | 37.78 | humidity | 70 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 22 | 37.80 | radiation | 1 | 90 | < th | dose independent | rect. | 21 | 22 |
| 27 | 37.88 | humidity | 70 | 10 | > th | dose independent | rect. | 10 | 19 |
| 40 | 38.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 41 | 38.03 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 47 | 38.07 | humidity | 70 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 48 | 38.11 | humidity | 60 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 50 | 38.15 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 52 | 38.18 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 20 |
| 68 | 38.31 | radiation | 10 | 30 | < th | dose dependent | sin | 11 | NA |
| 70 | 38.32 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 21 |
| 75 | 38.35 | humidity | 60 | 4320 | > th | dose independent | rect. | 4 | 10 |
| 85 | 38.36 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 92 | 38.38 | humidity | 60 | 14400 | < th | dose independent | sin | 11 | NA |
| 95 | 38.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 96 | 38.39 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 97 | 38.39 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 111 | 38.45 | humidity | 60 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 113 | 38.45 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 17 |
| 120 | 38.47 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 7 |
| 128 | 38.48 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 132 | 38.49 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 13 |
| 135 | 38.49 | radiation | 1 | 30 | < th | dose dependent | no | NA | NA |
| 136 | 38.49 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 138 | 38.49 | radiation | 1 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 144 | 38.49 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 145 | 38.49 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 154 | 38.51 | radiation | 1 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 158 | 38.52 | radiation | 1 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 162 | 38.54 | humidity | 60 | 14400 | > th | dose independent | sin | 11 | NA |
| 175 | 38.55 | radiation | 1 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 205 | 38.58 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 21 |
| 210 | 38.59 | humidity | 60 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 212 | 38.60 | humidity | 60 | 14400 | < th | dose dependent | sin | 11 | NA |
| 214 | 38.61 | humidity | 50 | 4320 | > th | dose independent | sin | 15 | NA |
| 215 | 38.61 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 228 | 38.64 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 20 |
| 255 | 38.67 | humidity | 60 | 14400 | < th | dose dependent | sin | 13 | NA |
| 263 | 38.69 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 16 |
| 270 | 38.70 | humidity | 70 | 4320 | < th | dose dependent | rect. | 17 | 21 |
| 273 | 38.71 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 301 | 38.73 | humidity | 60 | 4320 | < th | dose independent | rect. | 17 | 21 |
| 303 | 38.73 | humidity | 70 | 4320 | < th | dose dependent | rect. | 9 | 11 |
| 312 | 38.73 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 345 | 38.75 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 4 |
| 350 | 38.75 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 21 |
| 355 | 38.76 | humidity | 60 | 4320 | > th | dose independent | rect. | 10 | 19 |
| 357 | 38.76 | humidity | 60 | 4320 | > th | dose independent | rect. | 10 | 21 |
| 368 | 38.77 | humidity | 60 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 397 | 38.80 | radiation | 1 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 421 | 38.81 | humidity | 70 | 4320 | < th | dose dependent | sin | 17 | NA |
| 448 | 38.83 | humidity | 60 | 4320 | > th | dose independent | sin | 2 | NA |
| 491 | 38.84 | radiation | 1 | 90 | < th | dose independent | sin | 11 | NA |
| 518 | 38.84 | humidity | 70 | 4320 | < th | dose dependent | rect. | 12 | 23 |
| 523 | 38.85 | humidity | 50 | 4320 | < th | dose independent | sin | 15 | NA |
| 526 | 38.85 | humidity | 70 | 4320 | < th | dose dependent | no | NA | NA |
| 649 | 38.88 | humidity | 60 | 4320 | > th | dose independent | no | NA | NA |
| 652 | 38.88 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 656 | 38.88 | humidity | 60 | 4320 | > th | dose independent | rect. | 6 | 13 |
| 776 | 38.90 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 803 | 38.91 | humidity | 60 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 944 | 38.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 965 | 38.96 | humidity | 70 | 4320 | < th | dose independent | sin | 8 | NA |
| 999 | 38.97 | humidity | 60 | 720 | > th | dose independent | rect. | 7 | 6 |