Os05g0516100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0516100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 206.26 | 0.675 | 8.98 | -3.07 | 0.568 | -2.86 | 1.73 | -3.42 | -0.0403 | 20.4 | 0.9682 | 7325 | -- | -- |
| 214.43 | 0.682 | 9.01 | -3.5 | 0.556 | -2.35 | 1.62 | -- | -0.039 | 21.1 | 1.05 | 7479 | -- | -- |
| 214.8 | 0.683 | 8.98 | -3.18 | 0.578 | -2.87 | -- | -3.24 | -0.0364 | 19.9 | 0.95 | 7334 | -- | -- |
| 221.36 | 0.693 | 9.01 | -3.77 | 0.512 | -2.57 | -- | -- | -0.0948 | 21.5 | 1.058 | 7468 | -- | -- |
| 211.82 | 0.678 | 8.98 | -3.24 | -- | -2.88 | -- | -3.12 | -0.0371 | -- | 0.89 | 9465 | -- | -- |
| 300.75 | 0.813 | 8.92 | -3.19 | 0.52 | -- | 1.48 | -- | 0.366 | 19.4 | -- | -- | -- | -- |
| 305.41 | 0.818 | 8.92 | -3.22 | 0.553 | -- | -- | -- | 0.372 | 18.3 | -- | -- | -- | -- |
| 213.93 | 0.681 | 9.02 | -3.93 | -- | -2.39 | -- | -- | -0.111 | -- | 1.04 | 15115 | -- | -- |
| 520.99 | 1.06 | 9.06 | -- | 0.108 | -2.53 | -- | -- | 0.026 | 21.5 | 7.861 | 6525 | -- | -- |
| 321.3 | 0.838 | 8.91 | -3.23 | -- | -- | -- | -- | 0.361 | -- | -- | -- | -- | -- |
| 577.84 | 1.12 | 8.84 | -- | 0.599 | -- | -- | -- | 0.731 | 18.1 | -- | -- | -- | -- |
| 494.41 | 1.04 | 8.89 | -- | -- | -2.25 | -- | -- | 0.453 | -- | 8.4 | 9353 | -- | -- |
| 596.44 | 1.14 | 8.83 | -- | -- | -- | -- | -- | 0.719 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 197.59 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 5 | 198.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 7 | 198.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 20 | 199.53 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 30 | 200.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 34 | 200.21 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 20 |
| 46 | 200.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 55 | 200.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 62 | 201.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 67 | 201.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 20 |
| 75 | 201.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 98 | 201.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 103 | 201.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 104 | 201.63 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 115 | 201.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 121 | 201.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 122 | 201.76 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 144 | 201.95 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 148 | 201.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 176 | 202.11 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 197 | 202.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 211 | 202.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 21 |
| 213 | 202.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 214 | 202.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 224 | 202.32 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 244 | 202.38 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 249 | 202.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 251 | 202.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 11 |
| 261 | 202.43 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 271 | 202.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 272 | 202.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 274 | 202.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 19 |
| 276 | 202.44 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 280 | 202.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 282 | 202.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 297 | 202.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 300 | 202.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 305 | 202.47 | humidity | 90 | 43200 | < th | dose independent | sin | 18 | NA |
| 331 | 202.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 342 | 202.57 | humidity | 90 | 43200 | > th | dose independent | sin | 3 | NA |
| 343 | 202.57 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 9 |
| 344 | 202.57 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 17 |
| 347 | 202.58 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 348 | 202.58 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 355 | 202.60 | radiation | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 360 | 202.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 363 | 202.61 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 421 | 202.66 | humidity | 80 | 43200 | > th | dose dependent | sin | 19 | NA |
| 440 | 202.69 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 443 | 202.69 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 445 | 202.70 | radiation | 1 | 43200 | > th | dose independent | sin | 13 | NA |
| 457 | 202.72 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 459 | 202.72 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 466 | 202.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 477 | 202.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 478 | 202.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 481 | 202.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 20 |
| 489 | 202.76 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 495 | 202.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 498 | 202.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 506 | 202.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 21 |
| 525 | 202.76 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 549 | 202.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 590 | 202.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 614 | 202.86 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 713 | 202.89 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 716 | 202.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 739 | 202.94 | radiation | 1 | 43200 | > th | dose independent | sin | 19 | NA |
| 785 | 202.99 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 830 | 203.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 861 | 203.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 9 |
| 868 | 203.19 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 870 | 203.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 920 | 203.25 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 923 | 203.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 935 | 203.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 982 | 203.36 | humidity | 90 | 43200 | < th | dose independent | sin | 3 | NA |