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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0515500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.7 (0.0643) R2 : 0.676
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.35 (0.152) R2dC : 0.168 R2C : 0.124
β3 : 4.84 (0.198) R2dE : 0.453 R2E : 0.47
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.847 (0.139) R2dN8 : 0.0363 R2N8 : 0.0902
σ : 1.2
deviance : 658.98
__
_____
C
peak time of C : 12.2
E
wheather : temperature
threshold : 21
memory length : 5757
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
638.15 1.19 5.75 -0.389 2.32 4.73 1.84 -1.83 0.745 12 21.46 1517 -- --
637.86 1.18 5.68 -0.482 2.38 4.93 1.91 -- 0.822 12.2 20.8 5685 -- --
652.69 1.19 5.75 -0.344 2.31 4.74 -- -1.91 0.744 12.1 21.42 1519 -- --
654.33 1.19 5.71 -0.534 2.34 5.04 -- -- 0.756 12.2 20.4 5747 -- --
973.62 1.45 5.79 -0.411 -- 4.8 -- -2.01 0.734 -- 21.4 1620 -- --
1389.9 1.75 5.43 1.89 2.14 -- 1.71 -- 2 11.8 -- -- -- --
1402.3 1.75 5.43 1.96 2.13 -- -- -- 2.01 11.9 -- -- -- --
968.16 1.46 5.67 0.829 -- 5.53 -- -- 1.1 -- 20.4 5747 -- --
658.98 1.2 5.7 -- 2.35 4.84 -- -- 0.847 12.2 21 5757 -- --
1689 1.92 5.47 1.89 -- -- -- -- 1.98 -- -- -- -- --
1503.51 1.81 5.48 -- 2.11 -- -- -- 1.79 11.9 -- -- -- --
981.46 1.46 5.74 -- -- 4.62 -- -- 0.818 -- 21 5980 -- --
1783.65 1.97 5.52 -- -- -- -- -- 1.77 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 611.55 humidity 90 43200 > th dose dependent rect. 21 2
4 620.33 humidity 90 43200 < th dose independent rect. 10 1
7 625.30 humidity 90 43200 > th dose independent rect. 10 1
8 626.04 humidity 90 43200 > th dose independent rect. 21 2
10 628.99 humidity 90 43200 > th dose dependent rect. 18 6
18 632.89 humidity 90 43200 < th dose independent rect. 21 1
20 633.83 humidity 90 43200 < th dose independent rect. 18 1
28 637.89 radiation 1 14400 < th dose independent rect. 17 1
29 639.25 radiation 1 14400 < th dose dependent rect. 16 3
32 639.37 radiation 1 14400 < th dose dependent rect. 16 7
36 640.10 radiation 1 14400 < th dose independent rect. 17 7
38 640.11 radiation 1 14400 < th dose independent rect. 17 5
42 640.21 radiation 1 14400 < th dose independent rect. 17 11
55 640.50 humidity 90 43200 > th dose dependent rect. 9 16
62 641.09 temperature 20 1440 > th dose dependent rect. 12 21
78 641.48 humidity 90 43200 < th dose independent rect. 17 6
94 642.40 radiation 1 14400 < th dose dependent rect. 16 12
116 643.74 radiation 1 14400 > th dose independent rect. 17 2
133 643.88 temperature 20 1440 > th dose dependent rect. 13 11
137 644.23 temperature 20 1440 > th dose dependent rect. 2 21
157 644.59 radiation 1 14400 < th dose independent rect. 8 16
158 644.60 radiation 1 14400 < th dose independent rect. 8 14
164 644.65 radiation 1 14400 < th dose independent rect. 8 20
165 644.68 radiation 1 14400 < th dose independent rect. 8 11
184 644.98 radiation 1 14400 < th dose independent sin 17 NA
185 644.98 temperature 20 1440 > th dose dependent sin 17 NA
216 645.60 radiation 1 14400 < th dose dependent sin 17 NA
235 646.06 temperature 20 1440 > th dose dependent no NA NA
252 646.18 temperature 20 1440 > th dose dependent rect. 18 23
280 646.54 temperature 20 1440 > th dose dependent rect. 20 23
346 647.08 humidity 90 43200 > th dose independent rect. 18 5
348 647.08 humidity 90 43200 > th dose dependent sin 18 NA
424 648.13 humidity 90 43200 > th dose dependent rect. 4 20
432 648.26 radiation 1 14400 > th dose independent rect. 8 11
460 648.75 radiation 1 14400 > th dose independent sin 16 NA
502 649.45 temperature 20 43200 > th dose independent rect. 19 1
567 650.62 radiation 40 14400 < th dose dependent rect. 18 6
659 652.04 radiation 1 14400 > th dose dependent rect. 17 12
673 652.46 humidity 90 43200 > th dose independent rect. 9 15
686 652.88 humidity 90 43200 > th dose independent rect. 18 1
708 653.58 radiation 1 14400 > th dose dependent rect. 17 2
730 653.97 humidity 90 43200 > th dose independent rect. 2 22
771 654.76 radiation 1 14400 < th dose independent rect. 16 22
809 655.52 temperature 20 4320 > th dose dependent rect. 5 3
833 655.84 radiation 40 14400 < th dose dependent rect. 18 1
845 655.99 radiation 40 14400 < th dose dependent rect. 17 12
861 656.30 temperature 20 4320 > th dose dependent rect. 6 1
862 656.31 humidity 90 43200 > th dose independent rect. 12 12
869 656.38 humidity 90 43200 < th dose independent rect. 7 21
871 656.42 humidity 90 43200 < th dose independent sin 17 NA
881 656.75 humidity 90 43200 < th dose independent rect. 9 14
882 656.76 radiation 1 14400 < th dose dependent rect. 5 14
884 656.78 radiation 1 14400 < th dose dependent rect. 5 18
962 657.60 temperature 30 4320 < th dose dependent rect. 5 3
987 657.91 radiation 1 14400 < th dose independent rect. 2 22
989 657.92 radiation 1 14400 < th dose independent rect. 2 20
999 657.95 radiation 1 14400 < th dose independent rect. 12 23