Os05g0515400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcriptional factor B3 family protein.
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Os05g0515400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcriptional factor B3 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.7 | 0.318 | 8.9 | -0.563 | 0.817 | 1.1 | 0.209 | 0.629 | -0.252 | 16.5 | 23.2 | 40 | -- | -- |
| 46.04 | 0.316 | 8.91 | -0.607 | 0.807 | 1.15 | 0.226 | -- | -0.262 | 16.5 | 23.26 | 39 | -- | -- |
| 45.79 | 0.315 | 8.9 | -0.535 | 0.818 | 1.1 | -- | 0.815 | -0.244 | 16.5 | 23.2 | 38 | -- | -- |
| 46.22 | 0.317 | 8.91 | -0.639 | 0.81 | 1.16 | -- | -- | -0.267 | 16.5 | 23.26 | 38 | -- | -- |
| 67.44 | 0.382 | 8.9 | -0.673 | -- | 1.73 | -- | 0.48 | -0.291 | -- | 23.9 | 146 | -- | -- |
| 66.56 | 0.382 | 8.88 | -0.445 | 1.25 | -- | 0.645 | -- | -0.118 | 16.1 | -- | -- | -- | -- |
| 67.73 | 0.385 | 8.88 | -0.437 | 1.25 | -- | -- | -- | -0.115 | 16 | -- | -- | -- | -- |
| 67.27 | 0.382 | 8.91 | -0.778 | -- | 1.79 | -- | -- | -0.339 | -- | 23.97 | 145 | -- | -- |
| 56.76 | 0.351 | 8.89 | -- | 0.84 | 1.02 | -- | -- | -0.187 | 16.4 | 23.8 | 36 | -- | -- |
| 153.18 | 0.578 | 8.87 | -0.488 | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
| 72.76 | 0.399 | 8.87 | -- | 1.26 | -- | -- | -- | -0.0662 | 16 | -- | -- | -- | -- |
| 82.64 | 0.423 | 8.89 | -- | -- | 1.67 | -- | -- | -0.231 | -- | 24.2 | 146 | -- | -- |
| 159.46 | 0.589 | 8.86 | -- | -- | -- | -- | -- | -0.094 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 3 | 43.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 5 | 44.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 27 | 45.16 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 36 | 45.54 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 47 | 45.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 49 | 45.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 72 | 46.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 103 | 46.43 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 12 |
| 105 | 46.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 144 | 46.75 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 151 | 46.81 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 177 | 46.92 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 243 | 47.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 285 | 47.41 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 289 | 47.43 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 295 | 47.44 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 301 | 47.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 362 | 47.65 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 13 |
| 412 | 47.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 417 | 47.77 | temperature | 25 | 270 | > th | dose independent | sin | 22 | NA |
| 439 | 47.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 556 | 48.11 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |
| 574 | 48.15 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 14 |
| 654 | 48.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 713 | 48.36 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 938 | 48.74 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 9 |
| 993 | 48.84 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |