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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0514400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.41 (0.129) R2 : 0.561
β1 : -9.26 (0.801) R2dD : 0.721 R2D : 0.0163
β2 : 0.576 (0.237) R2dC : 0.00574 R2C : -0.0416
β3 : 5.95 (0.442) R2dE : 0.436 R2E : 0.0386
β4 : -3.6 (0.999) R2dD*C : 0.0128 R2D*C : -0.0499
β5 : -10.9 (3.37) R2dD*E : 0.0634 R2D*E : -0.376
γ1 : -1.95 (0.259) R2dN8 : 0.122 R2N8 : -0.0462
σ : 1.77
deviance : 1427.1
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_____
C
peak time of C : 20.5
E
wheather : temperature
threshold : 25.43
memory length : 1099
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.75
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1427.1 1.77 6.41 -9.26 0.576 5.95 -3.6 -10.9 -1.95 20.5 25.43 1099 9.75 --
1458.35 1.78 6.14 -6.82 0.554 4.9 -3.76 -- -1.41 21.4 25.41 1071 9.66 --
1461.28 1.78 6.38 -9.05 0.803 5.59 -- -10.6 -1.72 22.9 25.93 1135 9.81 --
1499.71 1.8 6.08 -6.71 0.839 4.49 -- -- -1.22 23.2 26.03 1113 8.98 --
1483.51 1.79 6.41 -9.12 -- 5.97 -- -11 -2.01 -- 25.29 1069 10.3 --
2236.34 2.22 6.08 -5.56 1.8 -- -0.8 -- -1.19 0.898 -- -- -- --
2238.61 2.22 6.07 -5.53 1.81 -- -- -- -1.19 1.09 -- -- -- --
1526.59 1.82 6.11 -6.79 -- 4.96 -- -- -1.43 -- 25.36 1041 9.64 --
2623.38 2.39 5.88 -- 0.814 3.7 -- -- -0.343 21.7 26.1 975 7.1 --
2441.21 2.31 6.04 -5.46 -- -- -- -- -1.15 -- -- -- -- --
3045.44 2.58 5.93 -- 1.72 -- -- -- -0.574 0.958 -- -- -- --
2654.9 2.4 5.88 -- -- 4.02 -- -- -0.417 -- 25.86 925 7.14 --
3228.79 2.65 5.91 -- -- -- -- -- -0.548 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1535.61 temperature 25 720 > th dose dependent rect. 17 15
3 1542.74 temperature 25 1440 > th dose dependent rect. 15 8
6 1545.54 temperature 25 1440 > th dose dependent rect. 14 19
11 1546.64 temperature 25 1440 > th dose dependent rect. 16 1
14 1546.95 temperature 25 1440 > th dose dependent rect. 15 4
37 1551.88 temperature 25 1440 > th dose dependent sin 17 NA
102 1558.86 temperature 25 1440 > th dose dependent rect. 6 17
181 1564.20 temperature 25 1440 > th dose dependent no NA NA
191 1564.93 temperature 25 720 > th dose dependent sin 12 NA
193 1564.98 temperature 25 1440 > th dose dependent rect. 20 23
267 1570.62 temperature 30 1440 < th dose independent sin 14 NA
275 1571.29 temperature 30 1440 > th dose independent sin 13 NA
286 1572.81 temperature 30 1440 < th dose independent rect. 14 14
291 1572.97 temperature 30 1440 < th dose independent rect. 14 17
296 1573.17 temperature 30 1440 < th dose independent rect. 14 11
299 1573.45 temperature 30 1440 < th dose independent rect. 14 7
300 1573.48 temperature 30 1440 < th dose independent rect. 14 5
315 1575.01 temperature 30 1440 > th dose independent rect. 14 5
466 1586.13 temperature 30 1440 < th dose independent rect. 9 22
468 1586.20 temperature 30 1440 < th dose independent rect. 9 19
472 1586.43 temperature 30 1440 < th dose independent rect. 9 16
474 1586.48 temperature 30 1440 < th dose independent rect. 9 10
514 1587.74 temperature 30 1440 < th dose independent rect. 17 23
560 1590.96 temperature 30 1440 > th dose independent rect. 9 10
574 1591.06 temperature 30 1440 < th dose independent rect. 6 22
577 1591.12 temperature 30 1440 < th dose independent rect. 24 19
585 1591.21 temperature 30 1440 < th dose independent rect. 2 23
592 1591.25 temperature 30 1440 < th dose independent rect. 2 17
597 1591.28 temperature 30 1440 < th dose independent rect. 6 19
599 1591.29 temperature 30 1440 < th dose independent no NA NA
604 1591.32 temperature 30 1440 < th dose independent rect. 6 13
711 1593.16 temperature 30 1440 > th dose independent rect. 17 23
773 1596.83 temperature 30 1440 > th dose independent no NA NA
954 1602.66 temperature 30 1440 < th dose independent rect. 9 7