Os05g0514200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : OsPK4.
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Os05g0514200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : OsPK4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.29 | 0.241 | 12 | 0.459 | 0.404 | -0.598 | -0.592 | -0.394 | -0.214 | 9.72 | 7.481 | 10 | -- | -- |
| 26.5 | 0.24 | 12 | 0.448 | 0.405 | -0.596 | -0.146 | -- | -0.213 | 9.84 | 7.7 | 9 | -- | -- |
| 26.5 | 0.24 | 12 | 0.458 | 0.395 | -0.598 | -- | 0.0212 | -0.205 | 9.87 | 7.456 | 6 | -- | -- |
| 26.47 | 0.24 | 12 | 0.44 | 0.414 | -0.583 | -- | -- | -0.206 | 10.1 | 7.352 | 6 | -- | -- |
| 28.95 | 0.251 | 12 | 0.423 | -- | -0.863 | -- | 0.0572 | -0.207 | -- | 7.057 | 3 | -- | -- |
| 32.1 | 0.266 | 11.9 | 0.444 | 1.06 | -- | -0.0326 | -- | -0.182 | 11 | -- | -- | -- | -- |
| 32.1 | 0.265 | 11.9 | 0.443 | 1.06 | -- | -- | -- | -0.183 | 11 | -- | -- | -- | -- |
| 28.95 | 0.251 | 12 | 0.444 | -- | -0.858 | -- | -- | -0.209 | -- | 7.034 | 3 | -- | -- |
| 31.59 | 0.262 | 12 | -- | 0.459 | -0.537 | -- | -- | -0.238 | 10.2 | 6.86 | 6 | -- | -- |
| 102.31 | 0.473 | 12 | 0.419 | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
| 37.27 | 0.286 | 12 | -- | 1.06 | -- | -- | -- | -0.232 | 11 | -- | -- | -- | -- |
| 34.08 | 0.272 | 12 | -- | -- | -0.849 | -- | -- | -0.262 | -- | 6.335 | 3 | -- | -- |
| 106.93 | 0.483 | 12 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.16 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 3 | 24.28 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 22 |
| 7 | 24.61 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 22 |
| 11 | 24.87 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 16 |
| 13 | 24.88 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 19 | 24.99 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 21 | 25.01 | radiation | 1.0 | 10 | > th | dose independent | sin | 1 | NA |
| 22 | 25.01 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 32 | 25.12 | radiation | 1.0 | 30 | < th | dose dependent | sin | 1 | NA |
| 33 | 25.16 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 13 |
| 37 | 25.18 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 39 | 25.20 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 1 | 17 |
| 58 | 25.35 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 11 |
| 61 | 25.35 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 66 | 25.37 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 7 |
| 77 | 25.43 | radiation | 1.0 | 30 | < th | dose independent | sin | 2 | NA |
| 78 | 25.43 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 20 |
| 80 | 25.43 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 20 |
| 104 | 25.55 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 106 | 25.56 | temperature | 10.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 108 | 25.56 | temperature | 30.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 109 | 25.56 | humidity | 50.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 112 | 25.56 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 1 | 4 |
| 113 | 25.56 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 115 | 25.56 | radiation | 1.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 120 | 25.56 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 20 |
| 121 | 25.56 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 126 | 25.57 | wind | 9.0 | 30 | < th | dose independent | rect. | 1 | 4 |
| 140 | 25.63 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 20 |
| 146 | 25.65 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 2 |
| 165 | 25.66 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 1 | 4 |
| 166 | 25.66 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 180 | 25.70 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 13 | 16 |
| 230 | 25.87 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 1 |
| 258 | 25.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 261 | 25.92 | wind | 9.0 | 30 | < th | dose dependent | rect. | 1 | 4 |
| 284 | 26.05 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 20 |
| 294 | 26.07 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 301 | 26.11 | radiation | 1.0 | 30 | < th | dose independent | rect. | 3 | 14 |
| 322 | 26.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 21 |
| 324 | 26.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 328 | 26.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 23 |
| 330 | 26.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 333 | 26.20 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 20 |
| 337 | 26.23 | wind | 1.0 | 270 | < th | dose independent | rect. | 24 | 2 |
| 363 | 26.26 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 3 | 15 |
| 365 | 26.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 1 |
| 368 | 26.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 385 | 26.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 387 | 26.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 388 | 26.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 391 | 26.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 392 | 26.32 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 394 | 26.32 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 401 | 26.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 23 |
| 402 | 26.32 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 417 | 26.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 1 |
| 447 | 26.40 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 452 | 26.40 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 464 | 26.42 | wind | 9.0 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 465 | 26.42 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 468 | 26.42 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 472 | 26.42 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 481 | 26.42 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 482 | 26.42 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 491 | 26.42 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 20 |
| 499 | 26.43 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 13 | 16 |
| 573 | 26.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 21 |
| 582 | 26.54 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 583 | 26.54 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 598 | 26.56 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 22 |
| 599 | 26.56 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 3 | 2 |
| 604 | 26.56 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 22 |
| 610 | 26.57 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 613 | 26.58 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 616 | 26.58 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 617 | 26.58 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 618 | 26.59 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 625 | 26.59 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 632 | 26.61 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 636 | 26.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 21 |
| 642 | 26.62 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 10 | 19 |
| 651 | 26.65 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 2 |
| 652 | 26.65 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 2 |
| 654 | 26.65 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 2 |
| 655 | 26.65 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 2 |
| 658 | 26.65 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 2 |
| 659 | 26.65 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 3 | 2 |
| 661 | 26.65 | radiation | 1.0 | 30 | < th | dose independent | rect. | 3 | 2 |
| 668 | 26.65 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 22 |
| 671 | 26.65 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 3 | 2 |
| 697 | 26.68 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 22 |
| 699 | 26.68 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 741 | 26.71 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 3 | 5 |
| 745 | 26.71 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 753 | 26.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 23 |
| 765 | 26.73 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 2 |
| 769 | 26.73 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 2 |
| 783 | 26.74 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 13 | 16 |
| 852 | 26.78 | radiation | 20.0 | 30 | < th | dose independent | rect. | 12 | 17 |
| 853 | 26.78 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 858 | 26.79 | humidity | 90.0 | 30 | > th | dose independent | rect. | 3 | 2 |
| 931 | 26.82 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 2 |
| 941 | 26.83 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 20 |
| 944 | 26.83 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 20 |
| 997 | 26.87 | humidity | 50.0 | 30 | > th | dose independent | rect. | 13 | 16 |