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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0512600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : X8 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0369) R2 : 0.00234
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0804 (0.0778) R2dN8 : 0.00302 R2N8 : 0.00234
σ : 0.696
deviance : 222.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.07 0.683 3.3 0.325 0.231 -0.759 -0.137 1.04 0.0925 1.46 14.75 1141 -- --
211.89 0.678 3.32 0.111 0.192 -0.727 -0.0417 -- 0.04 1.9 13.94 1308 -- --
211.13 0.677 3.3 0.317 0.232 -0.762 -- 0.965 0.0912 1.24 14.7 1144 -- --
211.88 0.678 3.33 0.113 0.216 -0.741 -- -- 0.0369 1.6 14.5 1230 -- --
212.77 0.683 3.31 0.177 -- -0.762 -- 1.04 0.0485 -- 14.8 1563 -- --
220.8 0.697 3.36 -0.114 0.134 -- -0.0964 -- -0.0959 2.13 -- -- -- --
220.82 0.696 3.36 -0.111 0.133 -- -- -- -0.0951 1.68 -- -- -- --
213.25 0.68 3.33 0.125 -- -0.722 -- -- 0.0403 -- 13.9 1626 -- --
212.17 0.678 3.33 -- 0.219 -0.699 -- -- 0.0168 1.48 14.5 1192 -- --
221.9 0.696 3.35 -0.106 -- -- -- -- -0.0922 -- -- -- -- --
221.15 0.696 3.35 -- 0.131 -- -- -- -0.0828 1.65 -- -- -- --
213.6 0.681 3.33 -- -- -0.667 -- -- 0.0184 -- 14.28 1625 -- --
222.2 0.696 3.35 -- -- -- -- -- -0.0804 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.03 wind 3.0 43200 > th dose dependent rect. 21 1
2 204.25 wind 5.0 43200 > th dose independent rect. 21 1
3 204.33 wind 5.0 43200 > th dose independent rect. 20 3
4 204.40 wind 5.0 43200 < th dose independent rect. 21 1
6 204.45 wind 9.0 43200 > th dose independent rect. 15 9
7 204.47 wind 5.0 43200 < th dose independent rect. 20 3
9 204.66 wind 9.0 43200 < th dose independent rect. 15 9
10 204.66 wind 9.0 43200 > th dose independent rect. 15 11
18 204.84 wind 9.0 43200 < th dose independent rect. 15 11
19 204.88 wind 5.0 43200 > th dose dependent rect. 19 3
25 204.97 radiation 1.0 43200 > th dose independent rect. 11 1
31 205.04 radiation 1.0 43200 < th dose independent rect. 11 1
33 205.04 radiation 1.0 43200 < th dose dependent rect. 11 1
37 205.11 wind 9.0 43200 < th dose independent rect. 16 3
43 205.22 wind 9.0 43200 > th dose dependent rect. 15 8
46 205.30 wind 9.0 43200 < th dose dependent rect. 21 1
48 205.34 wind 9.0 43200 > th dose independent rect. 16 3
56 205.49 wind 9.0 43200 > th dose dependent rect. 15 5
58 205.50 wind 7.0 43200 > th dose dependent rect. 17 1
60 205.52 wind 9.0 43200 > th dose dependent rect. 14 10
63 205.53 wind 9.0 43200 > th dose dependent rect. 14 13
67 205.58 wind 7.0 43200 < th dose independent rect. 17 5
105 205.90 wind 5.0 43200 > th dose dependent rect. 17 6
106 205.92 wind 9.0 43200 > th dose independent sin 16 NA
113 205.96 wind 9.0 43200 > th dose dependent rect. 11 20
130 206.06 wind 9.0 43200 > th dose dependent rect. 12 15
161 206.23 wind 9.0 43200 < th dose independent sin 16 NA
165 206.23 wind 9.0 43200 > th dose dependent rect. 12 12
176 206.28 humidity 80.0 43200 < th dose independent rect. 8 5
180 206.30 wind 5.0 43200 > th dose independent rect. 23 2
204 206.43 radiation 1.0 43200 > th dose independent rect. 10 6
205 206.43 radiation 1.0 43200 < th dose independent rect. 10 6
228 206.56 wind 5.0 43200 < th dose independent rect. 23 2
238 206.59 radiation 1.0 43200 < th dose dependent rect. 10 5
243 206.62 humidity 80.0 43200 > th dose independent rect. 7 6
249 206.65 wind 9.0 43200 > th dose independent rect. 10 17
261 206.70 wind 9.0 43200 > th dose independent rect. 11 21
266 206.71 wind 9.0 43200 > th dose independent rect. 10 14
268 206.72 radiation 1.0 43200 > th dose independent rect. 14 2
273 206.74 radiation 1.0 43200 < th dose independent rect. 14 2
281 206.79 wind 9.0 43200 > th dose independent rect. 9 9
288 206.82 wind 9.0 43200 > th dose independent rect. 12 19
317 206.90 wind 9.0 43200 < th dose independent rect. 10 17
335 206.94 wind 9.0 43200 < th dose independent rect. 10 14
349 206.97 humidity 70.0 43200 > th dose dependent rect. 11 2
353 206.98 radiation 1.0 43200 < th dose dependent rect. 14 1
359 206.99 radiation 1.0 43200 > th dose independent rect. 11 20
362 206.99 humidity 70.0 43200 > th dose dependent rect. 8 5
374 207.02 wind 9.0 43200 < th dose independent rect. 11 21
378 207.03 humidity 90.0 43200 > th dose dependent rect. 10 3
399 207.06 wind 9.0 43200 > th dose dependent sin 16 NA
411 207.08 radiation 1.0 43200 > th dose independent rect. 4 12
412 207.08 radiation 1.0 43200 < th dose independent rect. 4 12
430 207.08 radiation 1.0 43200 < th dose independent rect. 19 21
431 207.08 temperature 20.0 43200 > th dose dependent rect. 12 1
436 207.09 wind 9.0 43200 < th dose independent rect. 9 9
461 207.09 temperature 10.0 43200 > th dose dependent rect. 12 1
462 207.10 humidity 80.0 43200 < th dose independent rect. 9 3
467 207.11 radiation 1.0 43200 < th dose independent rect. 6 1
472 207.11 radiation 1.0 43200 < th dose independent rect. 11 20
475 207.12 radiation 1.0 43200 > th dose independent rect. 6 1
503 207.15 radiation 1.0 43200 < th dose independent rect. 4 3
513 207.15 radiation 1.0 43200 < th dose independent rect. 19 12
516 207.16 radiation 1.0 43200 > th dose independent rect. 4 3
548 207.19 temperature 30.0 43200 < th dose dependent rect. 12 1
553 207.20 temperature 20.0 43200 > th dose independent rect. 9 1
610 207.24 precipitation 0.1 43200 < th dose independent rect. 7 4
626 207.24 precipitation 0.1 43200 < th dose dependent rect. 7 4
640 207.26 radiation 1.0 43200 > th dose independent sin 23 NA
648 207.26 temperature 15.0 43200 > th dose dependent rect. 8 1
663 207.27 precipitation 0.1 43200 < th dose independent rect. 22 12
673 207.27 precipitation 0.1 43200 < th dose dependent rect. 22 12
681 207.28 precipitation 0.1 43200 > th dose independent rect. 22 12
728 207.30 humidity 90.0 43200 < th dose independent rect. 11 2
730 207.30 precipitation 0.1 43200 > th dose independent rect. 7 4
788 207.33 radiation 1.0 43200 < th dose independent sin 0 NA
790 207.33 temperature 25.0 43200 < th dose independent rect. 11 1
793 207.33 humidity 90.0 43200 > th dose independent rect. 10 5
794 207.33 temperature 25.0 43200 < th dose independent rect. 8 8
807 207.33 precipitation 0.1 43200 > th dose dependent rect. 7 4
821 207.34 temperature 25.0 43200 > th dose independent rect. 8 8
829 207.34 radiation 1.0 43200 < th dose independent rect. 11 13
856 207.35 temperature 30.0 43200 < th dose dependent rect. 8 1
857 207.35 radiation 40.0 14400 > th dose dependent rect. 8 1
888 207.36 temperature 25.0 43200 > th dose independent rect. 11 1
889 207.36 temperature 20.0 43200 < th dose independent rect. 8 2
890 207.36 humidity 90.0 43200 > th dose independent rect. 11 2
896 207.36 temperature 25.0 43200 > th dose independent rect. 5 12
921 207.37 temperature 25.0 43200 > th dose independent rect. 11 3
922 207.37 temperature 25.0 43200 < th dose independent rect. 11 3